Regulog RafR - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | ROK |
| Regulation mode: | activator |
| Biological process: | Raffinose utilization |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - ROK
- By pathway - Raffinose utilization
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium longum subsp. infantis ATCC 15697 | 4 | 2 |
| Bifidobacterium adolescentis ATCC 15703 | 5 | 3 |
| Bifidobacterium angulatum DSM 20098 | 5 | 3 |
| Bifidobacterium animalis subsp. lactis AD011 | 4 | 2 |
| Bifidobacterium bifidum NCIMB 41171 | ||
| Bifidobacterium breve DSM 20213 | 4 | 2 |
| Bifidobacterium dentium Bd1 | 5 | 3 |
| Bifidobacterium gallicum DSM 20093 | ||
| Bifidobacterium longum NCC2705 | 4 | 2 |
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| rafB |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -152 score = 5.54311 sequence = TTTATTGCGTTAATCACAAAATA Gene: Blon_2458: Raffinose ABC transporter, substrate-binding protein |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -161 score = 5.52088 sequence = TACTTTCCAAGAATAACAAAATA Gene: BAD_1574: Raffinose ABC transporter, substrate-binding protein |
*
Bifidobacterium angulatum DSM 20098 Site: position = -230 score = 4.20765 sequence = TTCTTTCCTTCGATATGAAATTT Gene: BIFANG_00401: Raffinose ABC transporter, substrate-binding protein |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -158 score = 4.14775 sequence = TAGTTTCCATGAGTATATAAATA Gene: BLA_1522: Raffinose ABC transporter, substrate-binding protein |
|
*
Bifidobacterium breve DSM 20213 Site: position = -152 score = 5.54311 sequence = TTTATTGCGTTAATCACAAAATA Gene: BIFBRE_00616: Raffinose ABC transporter, substrate-binding protein |
*
Bifidobacterium dentium Bd1 Site: position = -159 score = 5.2507 sequence = TACTTTCTCAGAATAACAAAATC Gene: BDP_2226: Raffinose ABC transporter, substrate-binding protein |
|
*
Bifidobacterium longum NCC2705 Site: position = -155 score = 5.54311 sequence = TTTATTGCGTTAATCACAAAATA Gene: BL1521: Raffinose ABC transporter, substrate-binding protein |
|
Raffinose ABC transporter, substrate-binding protein |
| rafC |
Gene: Blon_2457: Raffinose ABC transporter, permease protein 1 |
Gene: BAD_1573: Raffinose ABC transporter, permease protein 1 |
Gene: BIFANG_00400: Raffinose ABC transporter, permease protein 1 |
Gene: BLA_1521: Raffinose ABC transporter, permease protein 1 |
|
Gene: BIFBRE_00615: Raffinose ABC transporter, permease protein 1 |
Gene: BDP_2225: Raffinose ABC transporter, permease protein 1 |
|
Gene: BL1522: Raffinose ABC transporter, permease protein 1 |
|
Raffinose ABC transporter, permease protein 1 |
| rafD |
Gene: Blon_2456: Raffinose ABC transporter, permease protein 2 |
Gene: BAD_1572: Raffinose ABC transporter, permease protein 2 |
Gene: BIFANG_00399: Raffinose ABC transporter, permease protein 2 |
Gene: BLA_1520: Raffinose ABC transporter, permease protein 2 |
|
Gene: BIFBRE_00614: Raffinose ABC transporter, permease protein 2 |
Gene: BDP_2224: Raffinose ABC transporter, permease protein 2 |
|
Gene: BL1523: Raffinose ABC transporter, permease protein 2 |
|
Raffinose ABC transporter, permease protein 2 |
| CRON 2. | |||||||||||
| rafR |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -43 score = 5.54311 sequence = TATTTTGTGATTAACGCAATAAA Gene: Blon_2459: Raffinose utilization transcriptional regulator, ROK family |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -47 score = 5.52088 sequence = TATTTTGTTATTCTTGGAAAGTA Gene: BAD_1575: Raffinose utilization transcriptional regulator, ROK family |
*
Bifidobacterium angulatum DSM 20098 Site: position = -22 score = 3.7839 sequence = TAGTTACTCTTGGATAGTAAATA Gene: BIFANG_00405: Raffinose utilization transcriptional regulator, ROK family |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -13 score = 4.14775 sequence = TATTTATATACTCATGGAAACTA Gene: BLA_1523: Raffinose utilization transcriptional regulator, ROK family |
|
*
Bifidobacterium breve DSM 20213 Site: position = -25 score = 5.54311 sequence = TATTTTGTGATTAACGCAATAAA Gene: BIFBRE_00617: Raffinose utilization transcriptional regulator, ROK family |
*
Bifidobacterium dentium Bd1 Site: position = -115 score = 5.2507 sequence = GATTTTGTTATTCTGAGAAAGTA Gene: BDP_2227: Raffinose utilization transcriptional regulator, ROK family |
|
*
Bifidobacterium longum NCC2705 Site: position = -41 score = 5.54311 sequence = TATTTTGTGATTAACGCAATAAA Gene: BL1520: Raffinose utilization transcriptional regulator, ROK family |
|
Raffinose utilization transcriptional regulator, ROK family |
| CRON 3. | |||||||||||
| agaL |
Gene: Blon_2460: Alpha-galactosidase (EC 3.2.1.22) |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -104 score = 4.98683 sequence = TACTTTCCGAAAGAAACAAACAC Gene: BAD_1576: Alpha-galactosidase (EC 3.2.1.22) |
*
Bifidobacterium angulatum DSM 20098 Site: position = -104 score = 5.00118 sequence = TAGTTTCTGAAAACAAGAAACAC Gene: BIFANG_00406: Alpha-galactosidase (EC 3.2.1.22) |
Gene: BLA_1524: Alpha-galactosidase (EC 3.2.1.22) |
Gene: BbifN4_010100008850: Alpha-galactosidase (EC 3.2.1.22) |
Gene: BIFBRE_00618: Alpha-galactosidase (EC 3.2.1.22) |
*
Bifidobacterium dentium Bd1 Site: position = -106 score = 5.3489 sequence = TACTTTCCGAAAATAAGAAACAC Gene: BDP_2229: Alpha-galactosidase (EC 3.2.1.22) |
|
Gene: BL1518: Alpha-galactosidase (EC 3.2.1.22) |
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Alpha-galactosidase (EC 3.2.1.22) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |