Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RafR in Bifidobacterium angulatum DSM 20098

Properties
Regulator type: Transcription factor
TF locus tag: BIFANG_00405
Regulator family: ROK
Regulation mode: activator
Biological process: Raffinose utilization
Effector:
Regulog: RafR - Bifidobacteriaceae
Statistics of regulated genes:
- Genes 5
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -22
Score: 3.8
Sequence: TAGTTACTCTTGGATAGTAAATA
Locus tag: BIFANG_00405
Name: rafR
Funciton: Raffinose utilization transcriptional regulator, ROK family
rafR
Raffinose utilization transcriptional regulator, ROK family

Position: -104
Score: 5
Sequence: TAGTTTCTGAAAACAAGAAACAC
Locus tag: BIFANG_00406
Name: agaL
Funciton: Alpha-galactosidase (EC 3.2.1.22)
agaL
Alpha-galactosidase (EC 3.2.1.22)

Position: -230
Score: 4.2
Sequence: TTCTTTCCTTCGATATGAAATTT
Locus tag: BIFANG_00401
Name: rafB
Funciton: Raffinose ABC transporter, substrate-binding protein
Locus tag: BIFANG_00400
Name: rafC
Funciton: Raffinose ABC transporter, permease protein 1
Locus tag: BIFANG_00399
Name: rafD
Funciton: Raffinose ABC transporter, permease protein 2
rafB
Raffinose ABC transporter, substrate-binding protein
rafC
Raffinose ABC transporter, permease protein 1
rafD
Raffinose ABC transporter, permease protein 2
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD