Regulon of RafR in Bifidobacterium angulatum DSM 20098

Properties
Regulator type:	Transcription factor
TF locus tag:	BIFANG_00405
Regulator family:	ROK
Regulation mode:	activator
Biological process:	Raffinose utilization
Effector:
Regulog:	RafR - Bifidobacteriaceae
Statistics of regulated genes:
- Genes	5
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - ROK
By pathway - Raffinose utilization

Regulated operons
	Locus Tag	Name	Function
Position: -22 Score: 3.8 Sequence: TAGTTACTCTTGGATAGTAAATA Locus tag: BIFANG_00405 Name: rafR Funciton: Raffinose utilization transcriptional regulator, ROK family
	BIFANG_00405	rafR	Raffinose utilization transcriptional regulator, ROK family
Position: -104 Score: 5 Sequence: TAGTTTCTGAAAACAAGAAACAC Locus tag: BIFANG_00406 Name: agaL Funciton: Alpha-galactosidase (EC 3.2.1.22)
	BIFANG_00406	agaL	Alpha-galactosidase (EC 3.2.1.22)
Position: -230 Score: 4.2 Sequence: TTCTTTCCTTCGATATGAAATTT Locus tag: BIFANG_00401 Name: rafB Funciton: Raffinose ABC transporter, substrate-binding protein Locus tag: BIFANG_00400 Name: rafC Funciton: Raffinose ABC transporter, permease protein 1 Locus tag: BIFANG_00399 Name: rafD Funciton: Raffinose ABC transporter, permease protein 2
	BIFANG_00401	rafB	Raffinose ABC transporter, substrate-binding protein
	BIFANG_00400	rafC	Raffinose ABC transporter, permease protein 1
	BIFANG_00399	rafD	Raffinose ABC transporter, permease protein 2

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD