Regulons of Silicibacter TM1040

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	AglR	Alpha-glucoside; Maltose; Sucrose; Trehalose	Alpha-glucosides utilization	2	4
TF	BioR		Biotin biosynthesis	2	1
TF	CadR-PbrR	Lead ion, (Pb2+); Cadmium, ion (Cd2+)	Lead resistance; Cadmium resistance	1	1
TF	CceR (GapR)	6-phosphogluconate	Central carbohydrate metabolism	16	19
TF	Chvl			1	1
TF	EutR		Ectoine utilization	3	3
TF	EutR	Ethanolamine	Ethanolamine utilization	2	2
TF	FnrN	Oxygen	Oxidative stress response; Nitrogen fixation	9	9
TF	HrcA	Heat shock	Heat shock response	1	1
TF	HutC	cis-Urocanic acid	Histidine utilization	3	3
TF	HypR2	4-hydroxyproline	Proline and 4-hydrohyproline utilization	4	6
TF	IolR		Inositol utilization	4	5
TF	Irr	Heme	Iron homeostasis	6	3
TF	IscR	Iron-sulfur cluster redox state; Iron ion, (Fe2+)	Iron-sulfur cluster biogenesis; Iron homeostasis	9	8
TF	LexA	DNA damage	SOS response	9	9
TF	LiuR		Branched-chain amino acid degradation	2	1
TF	MetR	Homocysteine	Methionine biosynthesis	4	3
TF	Mur	Manganese ion, (Mn2+)	Manganese homeostasis	3	3
TF	NagQ	N-acetylglucosamine	N-acetylglucosamine utilization	2	2
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	1	1
TF	NtrC	Phosphorylated NtrB, signal histidine kinase	Nitrogen assimilation	5	6
TF	PaaR	Phenylacetyl-CoA	Phenylacetic acid degradation	3	2
TF	PhnF		Phosphonate utilization	3	1
TF	RutR	Uracil	Pyrimidine utilization	7	6
TF	SmoR	Sorbitol	Sorbitol utilization; Mannitol utilization	2	2
TF	SoxR	Paraquat	Superoxide stress response	4	3
TF	TauR	Taurine	Taurine utilization	4	2
TF	UxuR	Glucuronate	Glucuronate utilization	2	5
TF	Zur	Zinc ion, (Zn2+)	Zinc homeostasis	4	4
RNA	Cobalamin	Adenosylcobalamin	Cobalamin biosynthesis	11	6
RNA	FMN	Flavin mononucleotide	Riboflavin biosynthesis	2	2
RNA	Glycine	Glycine	Glycine metabolism	1	2
RNA	S15		Ribosome biogenesis	1	1
RNA	SAM-SAH	S-adenosylmethionine; S-adenosylhomocysteine	Methionine metabolism	1	1
RNA	SAM_alpha	S-adenosylmethionine	Methionine biosynthesis	3	1
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	6	3
RNA	mini-ykkC		Multidrug resistance	1	1
RNA	serC		Serine biosynthesis	1	1

	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulons of Silicibacter TM1040

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --