Regulon of FnrN in Silicibacter TM1040
| Regulator type: | Transcription factor |
| TF locus tag: | TM1040_2547 |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Oxidative stress response; Nitrogen fixation |
| Effector: | Oxygen |
| Regulog: | FnrN - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 19 |
| - Operons | 9 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By trascription factor - FnrN/FixK
- By TF family - CRP
- By effector - Oxygen
- By pathway - Oxidative stress response
- By pathway - Nitrogen fixation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -126
Score: 5.4 Sequence: ACATTGATCTGTATCAAGAT
Locus tag: TM1040_2546
Name: uspA Funciton: Predicted universal stress protein UspA |
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uspA
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Predicted universal stress protein UspA
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Position: -169
Score: 5.4 Sequence: TATTTGACCTGTATCAAGGA
Locus tag: TM1040_0860
Name: hemA Funciton: 5-aminolevulinate synthase (EC 2.3.1.37) |
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hemA
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5-aminolevulinate synthase (EC 2.3.1.37)
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Position: -117
Score: 5.4 Sequence: ATCTTGATACAGATCAATGT
Locus tag: TM1040_2545
Name: ccoN Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Locus tag: TM1040_2544
Name: ccoO Funciton: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Locus tag: TM1040_2543
Name: ccoQ Funciton: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Locus tag: TM1040_2542
Name: ccoP Funciton: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) |
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ccoN
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Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
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ccoO
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Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
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ccoQ
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Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
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ccoP
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Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
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Position: -79
Score: 5.4 Sequence: TTTTTGATCCACGTCAAAGT
Locus tag: TM1040_2540
Name: ccoG Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Locus tag: TM1040_2539
Name: ccoH Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoH
Locus tag: TM1040_2538
Name: ccoI Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: TM1040_2537
Name: ccoS Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion |
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ccoG
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Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
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ccoH
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Type cbb3 cytochrome oxidase biogenesis protein CcoH
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ccoI
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Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
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ccoS
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Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
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Position: -164
Score: 5.2 Sequence: TTTTTGATCTAAGTCAAGAA
Locus tag: TM1040_2336
Name: ctaC Funciton: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: TM1040_2335
Name: ctaB Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Locus tag: TM1040_2334
Name: ctaX Funciton: Hypothetical protein in cta gene cluster
Locus tag: TM1040_2333
Name: ctaG Funciton: Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: TM1040_2332
Name: ctaE Funciton: Cytochrome c oxidase polypeptide III (EC 1.9.3.1) |
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ctaC
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Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
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ctaB
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Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
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ctaX
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Hypothetical protein in cta gene cluster
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ctaG
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Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
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ctaE
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Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
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Position: -78
Score: 5.2 Sequence: CATTTGATCTAGATCAGAGC
Locus tag: TM1040_0734
Name: ompW Funciton: Outer membrane protein W precursor |
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ompW
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Outer membrane protein W precursor
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Position: -51
Score: 5.2 Sequence: TGGTTGATCTGTGTCAAAGC
Locus tag: TM1040_2548
Name: hemN Funciton: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) |
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hemN
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Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)
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Position: -125
Score: 5.6 Sequence: TTCTTGATCCAGATCAAACT
Locus tag: TM1040_2291
Name: ctaD Funciton: Cytochrome c oxidase polypeptide I (EC 1.9.3.1) |
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ctaD
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Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
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Position: -29
Score: 5.2 Sequence: GCTTTGACACAGATCAACCA
Locus tag: TM1040_2547
Name: fnrN Funciton: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family |
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fnrN
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Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |