Regulon of HypR2 in Silicibacter TM1040

Properties
Regulator type:	Transcription factor
TF locus tag:	TM1040_3324
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Proline and 4-hydrohyproline utilization
Effector:	4-hydroxyproline
Regulog:	HypR2 - Rhodobacterales
Statistics of regulated genes:
- Genes	7
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By trascription factor - HypR
By TF family - GntR/Others
By effector - 4-hydroxyproline
By pathway - Proline and 4-hydrohyproline utilization

Regulated operons
	Locus Tag	Name	Function
Position: -127 Score: 4.8 Sequence: TTTTGGATACGTTA Position: -41 Score: 4.3 Sequence: TGATGTATCCGATA Locus tag: TM1040_3323 Name: hypS Funciton: Putative L-lactate/Malate dehydrogenase
	TM1040_3323	hypS	Putative L-lactate/Malate dehydrogenase
Position: -55 Score: 4.8 Sequence: ATATGTATACATTA Locus tag: TM1040_3325 Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
	TM1040_3325	hypH	Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Position: -158 Score: 5.3 Sequence: TTTTGGATACAAAA Locus tag: TM1040_3198 Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted Locus tag: TM1040_3199 Name: hypE Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) Locus tag: TM1040_3200 Name: hypO Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster Locus tag: TM1040_3201 Name: hypY Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
	TM1040_3198	hypD	1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
	TM1040_3199	hypE	Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
	TM1040_3200	hypO	D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
	TM1040_3201	hypY	Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Position: -129 Score: 4.3 Sequence: TATCGGATACATCA Position: -43 Score: 4.8 Sequence: TAACGTATCCAAAA Locus tag: TM1040_3324 Name: hypR2 Funciton: Predicted regulator for proline and hydrohyproline utilization, GntR family
	TM1040_3324	hypR2	Predicted regulator for proline and hydrohyproline utilization, GntR family

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD