Regulog HypR2 - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Proline and 4-hydrohyproline utilization |
| Effector: | 4-hydroxyproline |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By trascription factor - HypR
- By TF family - GntR/Others
- By effector - 4-hydroxyproline
- By pathway - Proline and 4-hydrohyproline utilization
| Genome | Genes | Operons |
|---|---|---|
| Hyphomonas neptunium ATCC 15444 | ||
| Jannaschia sp. CCS1 | ||
| Loktanella vestfoldensis SKA53 | ||
| Oceanicaulis alexandrii HTCC2633 | ||
| Oceanicola batsensis HTCC2597 | ||
| Oceanicola granulosus HTCC2516 | ||
| Paracoccus denitrificans PD1222 | 3 | 2 |
| Rhodobacter sphaeroides 2.4.1 | ||
| Rhodobacterales bacterium HTCC2654 | ||
| Roseobacter sp. MED193 | 3 | 3 |
| Roseovarius nubinhibens ISM | 4 | 3 |
| Roseovarius sp. 217 | ||
| Silicibacter TM1040 | 7 | 4 |
| Silicibacter pomeroyi DSS-3 | 8 | 2 |
| Sulfitobacter sp. EE-36 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| hypR2 |
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Paracoccus denitrificans PD1222 Site: position = -178 score = 4.25769 sequence = TTTCGTATACTATA Gene: Pden_1183: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Predicted regulator for proline and hydrohyproline utilization, GntR family |
| CRON 2. | ||||||||||||||||
| hypY |
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Roseobacter sp. MED193 Site: position = -39 score = 4.48484 sequence = GATTGGATACAATA Gene: MED193_08463: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
| CRON 3. | ||||||||||||||||
| hypR2 |
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Roseobacter sp. MED193 Site: position = -86 score = 4.6297 sequence = TATTGGATCCAATT Gene: MED193_09635: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Predicted regulator for proline and hydrohyproline utilization, GntR family |
| CRON 4. | ||||||||||||||||
| hypS |
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Gene: OG2516_07021: Putative L-lactate/Malate dehydrogenase |
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Paracoccus denitrificans PD1222 Gene: Pden_4855: Putative L-lactate/Malate dehydrogenase Gene: Pden_4866: Putative L-lactate/Malate dehydrogenase Gene: Pden_0941: Putative L-lactate/Malate dehydrogenase |
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Gene: ROS217_16560: Putative L-lactate/Malate dehydrogenase |
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Silicibacter TM1040 Site: position = -127 score = 4.83735 sequence = TTTTGGATACGTTA Site: position = -41 score = 4.26549 sequence = TGATGTATCCGATA Gene: TM1040_3323: Putative L-lactate/Malate dehydrogenase |
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Putative L-lactate/Malate dehydrogenase |
| CRON 5. | ||||||||||||||||
| hypH |
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Roseovarius nubinhibens ISM Site: position = -59 score = 5.19986 sequence = TTTTGGATACATTA Gene: ISM_08240: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
Gene: ROS217_16585: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
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Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
| CRON 6. | ||||||||||||||||
| hypH |
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Gene: OG2516_08177: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
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Silicibacter TM1040 Site: position = -55 score = 4.75144 sequence = ATATGTATACATTA Gene: TM1040_3325: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
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Silicibacter pomeroyi DSS-3 Site: position = -64 score = 5.19986 sequence = TTTTGGATACATTA Gene: SPOA0260: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
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Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
| CRON 7. | ||||||||||||||||
| hypD |
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Gene: OG2516_07031: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
Gene: Pden_4867: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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Roseobacter sp. MED193 Site: position = -151 score = 4.6297 sequence = AATTGGATCCAATA Gene: MED193_09625: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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Roseovarius nubinhibens ISM Site: position = -165 score = 5.19986 sequence = TTTTGTATCCATTA Gene: ISM_08255: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
Gene: ROS217_16545: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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Silicibacter TM1040 Site: position = -158 score = 5.3043 sequence = TTTTGGATACAAAA Gene: TM1040_3198: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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Silicibacter pomeroyi DSS-3 Site: position = -172 score = 4.9554 sequence = TTCTGTATCCAAAA Gene: SPOA0267: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
| hypE |
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Gene: OG2516_07016: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
Gene: Pden_4859: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Gene: MED193_09620: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Gene: ROS217_16540: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
Gene: TM1040_3199: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
Gene: SPOA0266: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
| COG4663 |
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Gene: ISM_10311: TRAP-type C4-dicarboxylate transport system, periplasmic component |
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Gene: SPOA0265: TRAP-type C4-dicarboxylate transport system, periplasmic component |
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TRAP-type C4-dicarboxylate transport system, periplasmic component |
| COG3090 |
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Gene: ISM_10306: TRAP-type C4-dicarboxylate transport system, small permease component |
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Gene: SPOA0264: TRAP-type C4-dicarboxylate transport system, small permease component |
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TRAP-type C4-dicarboxylate transport system, small permease component |
| COG4664 |
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Gene: ISM_10301: TRAP-type C4-dicarboxylate transport system, large permease component |
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Gene: SPOA0263: TRAP-type C4-dicarboxylate transport system, large permease component |
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TRAP-type C4-dicarboxylate transport system, large permease component |
| hypO |
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Gene: OG2516_08202: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
Gene: Pden_4860: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
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Gene: MED193_09610: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
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Gene: ROS217_16535: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
Gene: TM1040_3200: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
Gene: SPOA0262: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
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D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
| hypR2 |
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Roseovarius nubinhibens ISM Site: position = -13 score = 5.19986 sequence = TAATGTATCCAAAA Gene: ISM_08245: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Silicibacter TM1040 Site: position = -129 score = 4.26549 sequence = TATCGGATACATCA Site: position = -43 score = 4.83735 sequence = TAACGTATCCAAAA Gene: TM1040_3324: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Silicibacter pomeroyi DSS-3 Site: position = -38 score = 4.12505 sequence = ATCTGTATCCGAAA Gene: SPOA0261: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Predicted regulator for proline and hydrohyproline utilization, GntR family |
| hypY |
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Gene: Jann_1529: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Gene: OG2516_07011: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Paracoccus denitrificans PD1222 Site: position = -50 score = 4.25769 sequence = TATAGTATACGAAA Gene: Pden_1184: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Gene: ISM_08250: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
Gene: ROS217_16530: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
Gene: TM1040_3201: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
Gene: SPO0607: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
| COG2423 |
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Gene: Pden_1185: Predicted ornithine cyclodeaminase, mu-crystallin homolog |
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Predicted ornithine cyclodeaminase, mu-crystallin homolog |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |