Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing hypE gene

Properties
Regulog: HypR2 - Rhodobacterales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Proline and 4-hydrohyproline utilization
Effector: 4-hydroxyproline
Phylum: Proteobacteria/alpha
Built upon 17 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Silicibacter TM1040
Position: -158
Score: 5.3043
Sequence: TTTTGGATACAAAA
Locus tag: TM1040_3198
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
Locus tag: TM1040_3199
Name: hypE
Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: TM1040_3200
Name: hypO
Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
Locus tag: TM1040_3201
Name: hypY
Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
hypD-hypE-hypO-hypY -158 5.3 TTTTGGATACAAAA TM1040_3198
Silicibacter pomeroyi DSS-3
Position: -172
Score: 4.9554
Sequence: TTCTGTATCCAAAA
Position: -38
Score: 4.12505
Sequence: ATCTGTATCCGAAA
Locus tag: SPOA0267
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
Locus tag: SPOA0266
Name: hypE
Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: SPOA0265
Name: COG4663
Funciton: TRAP-type C4-dicarboxylate transport system, periplasmic component
Locus tag: SPOA0264
Name: COG3090
Funciton: TRAP-type C4-dicarboxylate transport system, small permease component
Locus tag: SPOA0263
Name: COG4664
Funciton: TRAP-type C4-dicarboxylate transport system, large permease component
Locus tag: SPOA0262
Name: hypO
Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
Locus tag: SPOA0261
Name: hypR2
Funciton: Predicted regulator for proline and hydrohyproline utilization, GntR family
hypD-hypE-COG4663-COG3090-COG4664-hypO-hypR2 -172 5 TTCTGTATCCAAAA SPOA0267
-38 4.1 ATCTGTATCCGAAA