Regulon of LexA in Silicibacter TM1040

Properties
Regulator type:	Transcription factor
TF locus tag:	TM1040_1135
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Regulog:	LexA - Rhodobacterales
Statistics of regulated genes:
- Genes	9
- Operons	7
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 128 sites [see more]

Member of regulog collections

By trascription factor - LexA
By taxonomy - Rhodobacterales
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Regulated operons
	Locus Tag	Name	Function
Position: -57 Score: 0.7 Sequence: GAACGGAGCGTGAAC Locus tag: TM1040_2024 Name: uvrD Funciton: ATP-dependent DNA helicase II
	TM1040_2024	uvrD	ATP-dependent DNA helicase II
Position: -83 Score: 4.6 Sequence: GTTCCCCTTATGACC Position: -58 Score: -0.5 Sequence: ACACAAAACGGGAAC Locus tag: TM1040_1135 Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
	TM1040_1135	lexA	SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: 4 Score: 5.4 Sequence: GTTCGCGTTTTGTGC Locus tag: TM1040_2373 Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) Locus tag: TM1040_2372 Name: ruvA Funciton: Holliday junction DNA helicase RuvA Locus tag: TM1040_2371 Name: ruvB Funciton: Holliday junction DNA helicase RuvB
	TM1040_2373	ruvC	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
	TM1040_2372	ruvA	Holliday junction DNA helicase RuvA
	TM1040_2371	ruvB	Holliday junction DNA helicase RuvB
Position: -77 Score: 4.9 Sequence: GTTCCCCCTCTGTTC Locus tag: TM1040_1098 Name: uvrA Funciton: Excinuclease ABC subunit A
	TM1040_1098	uvrA	Excinuclease ABC subunit A
Position: -39 Score: 5.2 Sequence: GTTCTTTATTTGTTC Locus tag: TM1040_1469 Name: PF04055 Funciton: Radical SAM domain protein
	TM1040_1469	PF04055	Radical SAM domain protein
Position: -94 Score: 4.8 Sequence: GTTCTTGTTTTGACC Position: -72 Score: 0.5 Sequence: GAACAAGAGGAGAAC Locus tag: TM1040_1230 Name: recA Funciton: Recombinase A
	TM1040_1230	recA	Recombinase A
Position: -170 Score: 4.7 Sequence: GTTCACTAATTGTTC Locus tag: TM1040_2122 Name: PF06319 Funciton: Transcription elongation factor
	TM1040_2122	PF06319	Transcription elongation factor

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD