Regulog LexA - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Rhodobacterales
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 10 | 7 |
| Paracoccus denitrificans PD1222 | 12 | 7 |
| Jannaschia sp. CCS1 | 12 | 8 |
| Rhodobacterales bacterium HTCC2654 | 11 | 9 |
| Oceanicola granulosus HTCC2516 | 10 | 8 |
| Loktanella vestfoldensis SKA53 | 11 | 7 |
| Oceanicola batsensis HTCC2597 | 10 | 8 |
| Roseovarius nubinhibens ISM | 9 | 7 |
| Roseovarius sp. 217 | 11 | 9 |
| Sulfitobacter sp. EE-36 | 12 | 9 |
| Silicibacter TM1040 | 9 | 7 |
| Silicibacter pomeroyi DSS-3 | 8 | 6 |
| Roseobacter sp. MED193 | 14 | 9 |
| Hyphomonas neptunium ATCC 15444 | 9 | 7 |
| Oceanicaulis alexandrii HTCC2633 | 8 | 6 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| imuA |
|
*
Paracoccus denitrificans PD1222 Site: position = -56 score = 0.707591 sequence = GAACAAATCAGGAAC Gene: Pden_4289: Predicted RecA/RadA recombinase |
*
Jannaschia sp. CCS1 Site: position = 10 score = 0.823901 sequence = GAACAAATAGGGAAC Gene: Jann_1560: Predicted RecA/RadA recombinase |
|
*
Oceanicola granulosus HTCC2516 Site: position = -40 score = 0.827649 sequence = GAACAAATGAAGAAC Gene: OG2516_00284: Predicted RecA/RadA recombinase |
*
Loktanella vestfoldensis SKA53 Site: position = -59 score = 0.982698 sequence = GAACAAAGCATGAAC Gene: SKA53_09714: Predicted RecA/RadA recombinase |
|
Gene: ISM_11265: Predicted RecA/RadA recombinase |
|
Gene: EE36_00375: Predicted RecA/RadA recombinase |
Gene: TM1040_0177: Predicted RecA/RadA recombinase |
Gene: SPO0672: Predicted RecA/RadA recombinase |
Gene: MED193_05974: Predicted RecA/RadA recombinase |
*
Hyphomonas neptunium ATCC 15444 Site: position = -17 score = 1.18519 sequence = GAACAAAATAAGAAC Gene: HNE_2464: Predicted RecA/RadA recombinase |
|
Predicted RecA/RadA recombinase |
| imuB |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -20 score = 0.621057 sequence = GAACGAAACAGGAAC Gene: RSP_1458: DNA polymerase-like protein PA0670 |
Gene: Pden_4290: DNA polymerase-like protein PA0670 |
Gene: Jann_1559: DNA polymerase-like protein PA0670 |
*
Rhodobacterales bacterium HTCC2654 Site: position = -37 score = 1.71358 sequence = GAACATTAAGTGAAC Gene: RB2654_16956: DNA polymerase-like protein PA0670 |
Gene: OG2516_00265: DNA polymerase-like protein PA0670 |
Gene: SKA53_09709: DNA polymerase-like protein PA0670 |
*
Oceanicola batsensis HTCC2597 Site: position = -27 score = 1.40536 sequence = GAACGTAAAAGGAAC Gene: OB2597_10771: DNA polymerase-like protein PA0670 |
Gene: ISM_11260: DNA polymerase-like protein PA0670 |
*
Roseovarius sp. 217 Site: position = -24 score = 0.823901 sequence = GAACAAATAGAGAAC Gene: ROS217_11166: DNA polymerase-like protein PA0670 |
Gene: EE36_00380: DNA polymerase-like protein PA0670 |
Gene: TM1040_0176: DNA polymerase-like protein PA0670 |
Gene: SPO0671: DNA polymerase-like protein PA0670 |
Gene: MED193_05979: DNA polymerase-like protein PA0670 |
Gene: HNE_2465: DNA polymerase-like protein PA0670 |
|
DNA polymerase-like protein PA0670 |
| dnaE2 |
Gene: RSP_1123: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: Pden_4291: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: Jann_1558: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Rhodobacterales bacterium HTCC2654 Site: position = -28 score = 0.284889 sequence = GAACAAAACGTGAAT Gene: RB2654_12554: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: OG2516_00260: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: SKA53_09704: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Oceanicola batsensis HTCC2597 Site: position = -48 score = 0.284889 sequence = GAACAAAACGTGAAT Gene: OB2597_14496: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: ISM_11255: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Roseovarius sp. 217 Site: position = -46 score = 0.625792 sequence = GAACAAAACTGGAAC Gene: ROS217_05784: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: EE36_00385: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: TM1040_0175: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: SPO0670: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: MED193_05984: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: HNE_2466: DNA polymerase III alpha subunit (EC 2.7.7.7) |
|
DNA polymerase III alpha subunit (EC 2.7.7.7) |
| CRON 2. | ||||||||||||||||
| ruvC |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -48 score = 4.97404 sequence = GTTCCCGCTTCGTGC Gene: RSP_0556: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Paracoccus denitrificans PD1222 Site: position = -44 score = 5.14624 sequence = GTTCGCCTTTCGTGC Gene: Pden_0696: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Jannaschia sp. CCS1 Site: position = 2 score = 5.19684 sequence = GTTCGCGTTTCGTGC Gene: Jann_0964: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Rhodobacterales bacterium HTCC2654 Site: position = -62 score = 5.19684 sequence = GTTCGCGTTTCGTGC Gene: RB2654_05712: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Oceanicola granulosus HTCC2516 Site: position = -50 score = 4.85623 sequence = GTTCGCTGTTTGTGC Gene: OG2516_07702: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Loktanella vestfoldensis SKA53 Site: position = -49 score = 5.30572 sequence = GTTCGCCTTTTGTGC Gene: SKA53_08611: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Oceanicola batsensis HTCC2597 Site: position = -61 score = 4.72409 sequence = GTTCACTATTCGTGC Gene: OB2597_15620: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Roseovarius nubinhibens ISM Site: position = -60 score = 5.15214 sequence = GTTCTTGTTTCGTGC Gene: ISM_03450: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Roseovarius sp. 217 Site: position = -51 score = 5.18402 sequence = GTTCCCGTTTCGTGC Gene: ROS217_22507: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Sulfitobacter sp. EE-36 Site: position = -56 score = 5.19684 sequence = GTTCGCGTTTCGTGC Gene: EE36_09705: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Silicibacter TM1040 Site: position = 4 score = 5.35632 sequence = GTTCGCGTTTTGTGC Gene: TM1040_2373: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Silicibacter pomeroyi DSS-3 Site: position = -60 score = 5.13342 sequence = GTTCCCCTTTCGTGC Gene: SPO3117: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Roseobacter sp. MED193 Site: position = -64 score = 5.30572 sequence = GTTCGCCTTTTGTGC Gene: MED193_09210: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
Gene: HNE_0145: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Oceanicaulis alexandrii HTCC2633 Site: position = -38 score = 4.9189 sequence = GGTCGCGTTTTGTTC Gene: OA2633_07399: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
| ruvA |
Gene: RSP_0555: Holliday junction DNA helicase RuvA |
Gene: Pden_0695: Holliday junction DNA helicase RuvA |
Gene: Jann_0965: Holliday junction DNA helicase RuvA |
Gene: RB2654_05707: Holliday junction DNA helicase RuvA |
Gene: OG2516_07697: Holliday junction DNA helicase RuvA |
Gene: SKA53_08606: Holliday junction DNA helicase RuvA |
Gene: OB2597_15625: Holliday junction DNA helicase RuvA |
Gene: ISM_03445: Holliday junction DNA helicase RuvA |
Gene: ROS217_22502: Holliday junction DNA helicase RuvA |
Gene: EE36_09710: Holliday junction DNA helicase RuvA |
Gene: TM1040_2372: Holliday junction DNA helicase RuvA |
Gene: SPO3116: Holliday junction DNA helicase RuvA |
2
Roseobacter sp. MED193 Gene: MED193_09205: Holliday junction DNA helicase RuvA Gene: MED193_09200: Holliday junction DNA helicase RuvA |
Gene: HNE_0146: Holliday junction DNA helicase RuvA |
Gene: OA2633_07394: Holliday junction DNA helicase RuvA |
Holliday junction DNA helicase RuvA |
| htpx |
Gene: RSP_0554: Zn-dependent protease with chaperone function |
Gene: Pden_0694: Zn-dependent protease with chaperone function |
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Gene: SKA53_08161: Zn-dependent protease with chaperone function |
|
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Gene: ROS217_16735: Zn-dependent protease with chaperone function |
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|
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Gene: HNE_3367: Zn-dependent protease with chaperone function |
Gene: OA2633_10834: Zn-dependent protease with chaperone function |
Zn-dependent protease with chaperone function |
| ruvB |
Gene: RSP_0553: Holliday junction DNA helicase RuvB |
Gene: Pden_0693: Holliday junction DNA helicase RuvB |
Gene: Jann_0966: Holliday junction DNA helicase RuvB |
Gene: RB2654_05702: Holliday junction DNA helicase RuvB |
Gene: OG2516_07692: Holliday junction DNA helicase RuvB |
Gene: SKA53_08601: Holliday junction DNA helicase RuvB |
Gene: OB2597_15630: Holliday junction DNA helicase RuvB |
Gene: ISM_03440: Holliday junction DNA helicase RuvB |
Gene: ROS217_22497: Holliday junction DNA helicase RuvB |
Gene: EE36_09715: Holliday junction DNA helicase RuvB |
Gene: TM1040_2371: Holliday junction DNA helicase RuvB |
Gene: SPO3115: Holliday junction DNA helicase RuvB |
Gene: MED193_09195: Holliday junction DNA helicase RuvB |
Gene: HNE_0147: Holliday junction DNA helicase RuvB |
Gene: OA2633_07389: Holliday junction DNA helicase RuvB |
Holliday junction DNA helicase RuvB |
| CRON 3. | ||||||||||||||||
| uvrA |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -92 score = 4.77055 sequence = GTTCATACTATGTTC Gene: RSP_2966: Excinuclease ABC subunit A |
*
Paracoccus denitrificans PD1222 Site: position = -81 score = 4.66144 sequence = GTTCCTGTGATGTTC Gene: Pden_2252: Excinuclease ABC subunit A |
*
Jannaschia sp. CCS1 Site: position = -82 score = 4.52623 sequence = GTTCCTGAAACGTTC Gene: Jann_1723: Excinuclease ABC subunit A |
*
Rhodobacterales bacterium HTCC2654 Site: position = -81 score = 4.88113 sequence = GTTCACACTTCGTTC Gene: RB2654_04776: Excinuclease ABC subunit A |
*
Oceanicola granulosus HTCC2516 Site: position = -80 score = 5.17369 sequence = GTTCGCGCTATGTTC Gene: OG2516_01124: Excinuclease ABC subunit A |
*
Loktanella vestfoldensis SKA53 Site: position = -78 score = 4.09327 sequence = GTTCTATGAATGTTC Gene: SKA53_02831: Excinuclease ABC subunit A |
*
Oceanicola batsensis HTCC2597 Site: position = -80 score = 4.84042 sequence = GTTCGCGCAATGTTC Gene: OB2597_01212: Excinuclease ABC subunit A |
*
Roseovarius nubinhibens ISM Site: position = -77 score = 4.85452 sequence = GTTCACAGTTTGTTC Gene: ISM_10865: Excinuclease ABC subunit A |
*
Roseovarius sp. 217 Site: position = -82 score = 4.91804 sequence = GTTCGCGCTCTGTTC Gene: ROS217_19127: Excinuclease ABC subunit A |
*
Sulfitobacter sp. EE-36 Site: position = -78 score = 5.0646 sequence = GTTCCCCTTGTGTTC Gene: EE36_13533: Excinuclease ABC subunit A |
*
Silicibacter TM1040 Site: position = -77 score = 4.85462 sequence = GTTCCCCCTCTGTTC Gene: TM1040_1098: Excinuclease ABC subunit A |
*
Silicibacter pomeroyi DSS-3 Site: position = -81 score = 5.1997 sequence = GTTCTCTTTACGTTC Gene: SPO2218: Excinuclease ABC subunit A |
*
Roseobacter sp. MED193 Site: position = -117 score = 4.79562 sequence = GTTCTTCTAACGTTC Gene: MED193_03447: Excinuclease ABC subunit A |
*
Hyphomonas neptunium ATCC 15444 Site: position = -95 score = 5.25059 sequence = GTTCACATTTTGTTC Gene: HNE_2765: Excinuclease ABC subunit A |
*
Oceanicaulis alexandrii HTCC2633 Site: position = -187 score = 4.68963 sequence = GTTCACATTCCGTTC Gene: OA2633_04146: Excinuclease ABC subunit A |
Excinuclease ABC subunit A |
| CRON 4. | ||||||||||||||||
| PF04055 |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -27 score = 4.85169 sequence = GTTCCCTTTGCGTTC Gene: RSP_2123: Radical SAM domain protein |
*
Paracoccus denitrificans PD1222 Site: position = -27 score = 4.79829 sequence = GTTCTCTAAATGTTC Gene: Pden_3951: Radical SAM domain protein |
*
Jannaschia sp. CCS1 Site: position = -9 score = 4.72747 sequence = GTTCTTCAAATGTTC Gene: Jann_2549: Radical SAM domain protein |
*
Rhodobacterales bacterium HTCC2654 Site: position = -20 score = 4.54277 sequence = GTTCTACTAATGTTC Gene: RB2654_02045: Radical SAM domain protein |
*
Oceanicola granulosus HTCC2516 Site: position = -30 score = 5.4342 sequence = GTTCTTCTTTTGTTC Gene: OG2516_06172: Radical SAM domain protein |
|
*
Oceanicola batsensis HTCC2597 Site: position = -27 score = 5.02592 sequence = GTTCTCTTAATGTTC Gene: OB2597_03227: Radical SAM domain protein |
*
Roseovarius nubinhibens ISM Site: position = -27 score = 5.13342 sequence = GTTCGCGGTTTGTTC Gene: ISM_13455: Radical SAM domain protein |
*
Roseovarius sp. 217 Site: position = 6 score = 5.13155 sequence = GTTCTCTATATGTTC Gene: ROS217_19572: Radical SAM domain protein |
*
Sulfitobacter sp. EE-36 Site: position = -27 score = 5.02701 sequence = GTTCCTAATTTGTTC Gene: EE36_15677: Radical SAM domain protein |
*
Silicibacter TM1040 Site: position = -39 score = 5.15315 sequence = GTTCTTTATTTGTTC Gene: TM1040_1469: Radical SAM domain protein |
Gene: SPO2159: Radical SAM domain protein |
*
Roseobacter sp. MED193 Site: position = -39 score = 5.20657 sequence = GTTCTTCATTTGTTC Gene: MED193_22781: Radical SAM domain protein |
*
Hyphomonas neptunium ATCC 15444 Site: position = -100 score = 5.27482 sequence = GTTCTTGCTTTGTTC Gene: HNE_1903: Radical SAM domain protein |
*
Oceanicaulis alexandrii HTCC2633 Site: position = -9 score = 5.11134 sequence = GTTCTTGATATGTTC Gene: OA2633_14191: Radical SAM domain protein |
Radical SAM domain protein |
| CRON 5. | ||||||||||||||||
| lexA |
Gene: RSP_1997: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Paracoccus denitrificans PD1222 Site: position = -47 score = 1.41506 sequence = GAACAATCAACGAAC Gene: Pden_2142: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Jannaschia sp. CCS1 Site: position = -77 score = 1.32548 sequence = GAACATACCCTGAAC Gene: Jann_1874: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Rhodobacterales bacterium HTCC2654 Site: position = -83 score = -0.368622 sequence = ACACGAAACGAGAAC Gene: RB2654_04726: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Oceanicola granulosus HTCC2516 Site: position = -70 score = -0.509719 sequence = ACACAAAACGGGAAC Gene: OG2516_03218: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Loktanella vestfoldensis SKA53 Site: position = -32 score = 0.022675 sequence = GAACATAAGCAAAAC Site: position = -54 score = -0.389661 sequence = ACACAAAAGGGGAAC Gene: SKA53_02996: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Oceanicola batsensis HTCC2597 Site: position = -63 score = 0.417118 sequence = ACACAAAACATGAAC Gene: OB2597_01402: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Roseovarius nubinhibens ISM Site: position = -58 score = -0.509719 sequence = ACACAAAACGAGAAC Gene: ISM_14765: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Roseovarius sp. 217 Site: position = -58 score = -0.509719 sequence = ACACAAAACGGGAAC Gene: ROS217_21392: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Sulfitobacter sp. EE-36 Site: position = -56 score = -0.254066 sequence = ACACAAAACAGGAAC Gene: EE36_16202: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Silicibacter TM1040 Site: position = -58 score = -0.509719 sequence = ACACAAAACGGGAAC Site: position = -83 score = 4.58627 sequence = GTTCCCCTTATGACC Gene: TM1040_1135: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Silicibacter pomeroyi DSS-3 Site: position = -59 score = -0.254066 sequence = ACACAAAACAAGAAC Gene: SPO2154: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Roseobacter sp. MED193 Site: position = -47 score = 1.5479 sequence = GAACATGAATAGAAC Site: position = -58 score = -0.509719 sequence = ACACAAAACGGGAAC Gene: MED193_03687: SOS-response repressor and protease LexA (EC 3.4.21.88) |
Gene: HNE_1786: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Oceanicaulis alexandrii HTCC2633 Site: position = -27 score = 4.72002 sequence = GTTTCTATTTTGTTC Gene: OA2633_02671: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
| CRON 6. | ||||||||||||||||
| PF06319 |
*
Rhodobacter sphaeroides 2.4.1 Site: position = 10 score = 4.45562 sequence = GTTCCCTGTCCGTTC Gene: RSP_0751: Transcription elongation factor |
*
Paracoccus denitrificans PD1222 Site: position = -26 score = 4.82258 sequence = GTTTCCGTTTCGTTC Gene: Pden_1550: Transcription elongation factor |
*
Jannaschia sp. CCS1 Site: position = -26 score = 5.00454 sequence = GTTCACCTATTGTTC Gene: Jann_3406: Transcription elongation factor |
*
Rhodobacterales bacterium HTCC2654 Site: position = -26 score = 4.8275 sequence = GTTCACGAATTGTTC Gene: RB2654_05485: Transcription elongation factor |
*
Oceanicola granulosus HTCC2516 Site: position = -27 score = 4.93147 sequence = GTTTCCCTTTTGTTC Gene: OG2516_05778: Transcription elongation factor |
*
Loktanella vestfoldensis SKA53 Site: position = -26 score = 5.00454 sequence = GTTCACCTATTGTTC Gene: SKA53_02001: Transcription elongation factor |
*
Oceanicola batsensis HTCC2597 Site: position = -26 score = 4.57765 sequence = GTTCACTAAATGTTC Gene: OB2597_02052: Transcription elongation factor |
*
Roseovarius nubinhibens ISM Site: position = -26 score = 5.14722 sequence = GTTCCCGCTTCGTTC Gene: ISM_00090: Transcription elongation factor |
*
Roseovarius sp. 217 Site: position = -26 score = 5.00919 sequence = GTTCGTGGTTTGTTC Gene: ROS217_03665: Transcription elongation factor |
*
Sulfitobacter sp. EE-36 Site: position = -26 score = 4.70327 sequence = GTTCATGAATTGTTC Gene: EE36_02883: Transcription elongation factor |
*
Silicibacter TM1040 Site: position = -170 score = 4.72348 sequence = GTTCACTAATTGTTC Gene: TM1040_2122: Transcription elongation factor |
*
Silicibacter pomeroyi DSS-3 Site: position = -20 score = 5.00454 sequence = GTTCACCTATTGTTC Gene: SPO1766: Transcription elongation factor |
*
Roseobacter sp. MED193 Site: position = -26 score = 5.17175 sequence = GTTCTCTTATTGTTC Gene: MED193_08438: Transcription elongation factor |
Gene: HNE_3451: Transcription elongation factor |
Gene: OA2633_09489: Transcription elongation factor |
Transcription elongation factor |
| CRON 7. | ||||||||||||||||
| rmuC |
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*
Hyphomonas neptunium ATCC 15444 Site: position = -41 score = 4.57641 sequence = GTTCCGATTATGTTC Gene: HNE_0511: DNA recombination protein RmuC |
*
Oceanicaulis alexandrii HTCC2633 Site: position = -37 score = 4.7466 sequence = GGTCCCGTTTCGTTC Gene: OA2633_12765: DNA recombination protein RmuC |
DNA recombination protein RmuC |
| CRON 8. | ||||||||||||||||
| radA |
Gene: RSP_2456: DNA repair protein RadA |
Gene: Pden_3941: DNA repair protein RadA |
Gene: Jann_1712: DNA repair protein RadA |
Gene: RB2654_02269: DNA repair protein RadA |
Gene: OG2516_15619: DNA repair protein RadA |
Gene: SKA53_02581: DNA repair protein RadA |
Gene: OB2597_00495: DNA repair protein RadA |
Gene: ISM_15830: DNA repair protein RadA |
Gene: ROS217_20382: DNA repair protein RadA |
*
Sulfitobacter sp. EE-36 Site: position = -29 score = 4.72149 sequence = GTTTCCCCTTTGTTC Gene: EE36_16347: DNA repair protein RadA |
Gene: TM1040_1784: DNA repair protein RadA |
Gene: SPO2674: DNA repair protein RadA |
Gene: MED193_06804: DNA repair protein RadA |
*
Hyphomonas neptunium ATCC 15444 Site: position = -294 score = 4.26663 sequence = GTCCATTTTTCGTTC Gene: HNE_0720: DNA repair protein RadA |
Gene: OA2633_00845: DNA repair protein RadA |
DNA repair protein RadA |
| CRON 9. | ||||||||||||||||
| uvrD |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -56 score = 0.746879 sequence = GAACGATTGCGGAAC Gene: RSP_2092: ATP-dependent DNA helicase II |
Gene: Pden_4295: ATP-dependent DNA helicase II |
*
Jannaschia sp. CCS1 Site: position = -56 score = 1.49268 sequence = GAACAATCTGCGAAC Gene: Jann_2777: ATP-dependent DNA helicase II |
*
Rhodobacterales bacterium HTCC2654 Site: position = -111 score = 1.32548 sequence = GAACATACCCTGAAC Gene: RB2654_21543: ATP-dependent DNA helicase II |
*
Oceanicola granulosus HTCC2516 Site: position = -57 score = -0.0641964 sequence = GAACAGAGCGGGAAC Gene: OG2516_00125: ATP-dependent DNA helicase II |
*
Loktanella vestfoldensis SKA53 Site: position = -55 score = 0.766889 sequence = GAACGGAAGTAGAAC Gene: SKA53_07341: ATP-dependent DNA helicase II |
Gene: OB2597_16110: ATP-dependent DNA helicase II |
*
Roseovarius nubinhibens ISM Site: position = -56 score = 0.395804 sequence = GAACAATCGCGGAAC Gene: ISM_13365: ATP-dependent DNA helicase II |
*
Roseovarius sp. 217 Site: position = -56 score = 0.787447 sequence = GAACAATCCCCGAAC Gene: ROS217_21917: ATP-dependent DNA helicase II |
*
Sulfitobacter sp. EE-36 Site: position = -55 score = 2.11499 sequence = GAACATTTTGCGAAC Gene: EE36_17037: ATP-dependent DNA helicase II |
*
Silicibacter TM1040 Site: position = -57 score = 0.748084 sequence = GAACGGAGCGTGAAC Gene: TM1040_2024: ATP-dependent DNA helicase II |
*
Silicibacter pomeroyi DSS-3 Site: position = -113 score = 1.05095 sequence = GAACAAGCCGTGAAC Gene: SPO1174: ATP-dependent DNA helicase II |
*
Roseobacter sp. MED193 Site: position = -57 score = 1.32118 sequence = GAACAGAATGCGAAC Gene: MED193_07538: ATP-dependent DNA helicase II |
*
Hyphomonas neptunium ATCC 15444 Site: position = -138 score = -0.893694 sequence = GAAAAAAGCGCAAAC Gene: HNE_2938: ATP-dependent DNA helicase II |
Gene: OA2633_05351: ATP-dependent DNA helicase II |
ATP-dependent DNA helicase II |
| CRON 10. | ||||||||||||||||
| recA |
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Rhodobacter sphaeroides 2.4.1 Site: position = -64 score = 1.09996 sequence = GAACATAGGGCGAAC Site: position = -92 score = 4.97517 sequence = GTTCGCCTTATGATC Gene: RSP_0452: Recombinase A |
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Paracoccus denitrificans PD1222 Site: position = -77 score = 1.00035 sequence = GAACAACCCGTGAAC Gene: Pden_0597: Recombinase A |
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Jannaschia sp. CCS1 Site: position = -98 score = 0.617766 sequence = GAACAAGACAAGAAC Site: position = -127 score = 4.8742 sequence = GTTCTTGTTTTGTTT Gene: Jann_1986: Recombinase A |
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Rhodobacterales bacterium HTCC2654 Site: position = -56 score = 0.993872 sequence = GAACAAGAGGCGAAC Gene: RB2654_03904: Recombinase A |
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Oceanicola granulosus HTCC2516 Site: position = -63 score = 0.993872 sequence = GAACAAGAGGCGAAC Site: position = -91 score = 4.9924 sequence = GTTCTCTTTTTGGTC Gene: OG2516_04603: Recombinase A |
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Loktanella vestfoldensis SKA53 Site: position = -64 score = 1.2684 sequence = GAACATAAGGCGAAC Site: position = -91 score = 4.90627 sequence = GTTCATGTTTTGATC Gene: SKA53_03339: Recombinase A |
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Oceanicola batsensis HTCC2597 Site: position = -68 score = 0.993872 sequence = GAACAAGAGGCGAAC Site: position = -91 score = 4.92159 sequence = GTTCTTCTTTTGGTC Gene: OB2597_01672: Recombinase A |
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Roseovarius nubinhibens ISM Site: position = -90 score = 0.703157 sequence = GAACAGCACGCGAAC Site: position = -118 score = 5.29805 sequence = GTTCTCATTTTGTGC Gene: ISM_14955: Recombinase A |
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Roseovarius sp. 217 Site: position = -66 score = 0.993872 sequence = GAACAAGAGGCGAAC Site: position = -94 score = 4.91895 sequence = GTTCTCTCTTTGTCC Gene: ROS217_20887: Recombinase A |
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Sulfitobacter sp. EE-36 Site: position = -82 score = 1.09581 sequence = GAACATAGAAAGAAC Site: position = -104 score = 5.11334 sequence = GTTCTCATTTTGATC Gene: EE36_14243: Recombinase A |
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Silicibacter TM1040 Site: position = -72 score = 0.482171 sequence = GAACAAGAGGAGAAC Site: position = -94 score = 4.75082 sequence = GTTCTTGTTTTGACC Gene: TM1040_1230: Recombinase A |
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Silicibacter pomeroyi DSS-3 Site: position = -87 score = 1.15335 sequence = GAACAAGAGGTGAAC Site: position = -109 score = 5.14712 sequence = GTTCTCTTTTTGATC Gene: SPO2034: Recombinase A |
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Roseobacter sp. MED193 Site: position = -93 score = 4.82446 sequence = GTTCTCCTTTTGACC Gene: MED193_04366: Recombinase A |
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Hyphomonas neptunium ATCC 15444 Site: position = -128 score = 4.64785 sequence = GTTTCTGCTTTGTTC Gene: HNE_2742: Recombinase A |
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Oceanicaulis alexandrii HTCC2633 Site: position = -68 score = 1.54308 sequence = GAACAAAATAAGTAC Site: position = -86 score = 4.83148 sequence = GTTCCTGTTGCGTTC Gene: OA2633_04776: Recombinase A |
Recombinase A |
| CRON 11. | ||||||||||||||||
| umuD |
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Sulfitobacter sp. EE-36 Site: position = -154 score = 1.36047 sequence = GAACACATAGAGAAC Gene: EE36_13253: DNA polymerase V, subunit UmuD |
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*2
Roseobacter sp. MED193 Site: position = -30 score = 0.17592 sequence = GAACAAAGGCAGAAC Gene: MED193_12418: DNA polymerase V, subunit UmuD Site: position = -44 score = 5.13855 sequence = GTTCACTTTATGTTC Gene: MED193_12443: DNA polymerase V, subunit UmuD |
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DNA polymerase V, subunit UmuD |
| umuC |
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Gene: EE36_13258: DNA polymerase V, subunit UmuC |
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2
Roseobacter sp. MED193 Gene: MED193_12423: DNA polymerase V, subunit UmuC Gene: MED193_12438: DNA polymerase V, subunit UmuC |
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DNA polymerase V, subunit UmuC |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |