Statistics of regulated genes

Genome	Genes	Operons
Rhodobacter sphaeroides 2.4.1	10	7
Paracoccus denitrificans PD1222	12	7
Jannaschia sp. CCS1	12	8
Rhodobacterales bacterium HTCC2654	11	9
Oceanicola granulosus HTCC2516	10	8
Loktanella vestfoldensis SKA53	11	7
Oceanicola batsensis HTCC2597	10	8
Roseovarius nubinhibens ISM	9	7
Roseovarius sp. 217	11	9
Sulfitobacter sp. EE-36	12	9
Silicibacter TM1040	9	7
Silicibacter pomeroyi DSS-3	8	6
Roseobacter sp. MED193	14	9
Hyphomonas neptunium ATCC 15444	9	7
Oceanicaulis alexandrii HTCC2633	8	6

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																Function
CRON 1.
imuA	Rhodobacter sphaeroides 2.4.1	* Paracoccus denitrificans PD1222 Site: position = -56 score = 0.707591 sequence = GAACAAATCAGGAAC Gene: Pden_4289: Predicted RecA/RadA recombinase	* Jannaschia sp. CCS1 Site: position = 10 score = 0.823901 sequence = GAACAAATAGGGAAC Gene: Jann_1560: Predicted RecA/RadA recombinase	Rhodobacterales bacterium HTCC2654	* Oceanicola granulosus HTCC2516 Site: position = -40 score = 0.827649 sequence = GAACAAATGAAGAAC Gene: OG2516_00284: Predicted RecA/RadA recombinase	* Loktanella vestfoldensis SKA53 Site: position = -59 score = 0.982698 sequence = GAACAAAGCATGAAC Gene: SKA53_09714: Predicted RecA/RadA recombinase	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM Gene: ISM_11265: Predicted RecA/RadA recombinase	Roseovarius sp. 217	Sulfitobacter sp. EE-36 Gene: EE36_00375: Predicted RecA/RadA recombinase	Silicibacter TM1040 Gene: TM1040_0177: Predicted RecA/RadA recombinase	Silicibacter pomeroyi DSS-3 Gene: SPO0672: Predicted RecA/RadA recombinase	Roseobacter sp. MED193 Gene: MED193_05974: Predicted RecA/RadA recombinase	* Hyphomonas neptunium ATCC 15444 Site: position = -17 score = 1.18519 sequence = GAACAAAATAAGAAC Gene: HNE_2464: Predicted RecA/RadA recombinase	Oceanicaulis alexandrii HTCC2633	Predicted RecA/RadA recombinase
imuB	* Rhodobacter sphaeroides 2.4.1 Site: position = -20 score = 0.621057 sequence = GAACGAAACAGGAAC Gene: RSP_1458: DNA polymerase-like protein PA0670	Paracoccus denitrificans PD1222 Gene: Pden_4290: DNA polymerase-like protein PA0670	Jannaschia sp. CCS1 Gene: Jann_1559: DNA polymerase-like protein PA0670	* Rhodobacterales bacterium HTCC2654 Site: position = -37 score = 1.71358 sequence = GAACATTAAGTGAAC Gene: RB2654_16956: DNA polymerase-like protein PA0670	Oceanicola granulosus HTCC2516 Gene: OG2516_00265: DNA polymerase-like protein PA0670	Loktanella vestfoldensis SKA53 Gene: SKA53_09709: DNA polymerase-like protein PA0670	* Oceanicola batsensis HTCC2597 Site: position = -27 score = 1.40536 sequence = GAACGTAAAAGGAAC Gene: OB2597_10771: DNA polymerase-like protein PA0670	Roseovarius nubinhibens ISM Gene: ISM_11260: DNA polymerase-like protein PA0670	* Roseovarius sp. 217 Site: position = -24 score = 0.823901 sequence = GAACAAATAGAGAAC Gene: ROS217_11166: DNA polymerase-like protein PA0670	Sulfitobacter sp. EE-36 Gene: EE36_00380: DNA polymerase-like protein PA0670	Silicibacter TM1040 Gene: TM1040_0176: DNA polymerase-like protein PA0670	Silicibacter pomeroyi DSS-3 Gene: SPO0671: DNA polymerase-like protein PA0670	Roseobacter sp. MED193 Gene: MED193_05979: DNA polymerase-like protein PA0670	Hyphomonas neptunium ATCC 15444 Gene: HNE_2465: DNA polymerase-like protein PA0670	Oceanicaulis alexandrii HTCC2633	DNA polymerase-like protein PA0670
dnaE2	Rhodobacter sphaeroides 2.4.1 Gene: RSP_1123: DNA polymerase III alpha subunit (EC 2.7.7.7)	Paracoccus denitrificans PD1222 Gene: Pden_4291: DNA polymerase III alpha subunit (EC 2.7.7.7)	Jannaschia sp. CCS1 Gene: Jann_1558: DNA polymerase III alpha subunit (EC 2.7.7.7)	* Rhodobacterales bacterium HTCC2654 Site: position = -28 score = 0.284889 sequence = GAACAAAACGTGAAT Gene: RB2654_12554: DNA polymerase III alpha subunit (EC 2.7.7.7)	Oceanicola granulosus HTCC2516 Gene: OG2516_00260: DNA polymerase III alpha subunit (EC 2.7.7.7)	Loktanella vestfoldensis SKA53 Gene: SKA53_09704: DNA polymerase III alpha subunit (EC 2.7.7.7)	* Oceanicola batsensis HTCC2597 Site: position = -48 score = 0.284889 sequence = GAACAAAACGTGAAT Gene: OB2597_14496: DNA polymerase III alpha subunit (EC 2.7.7.7)	Roseovarius nubinhibens ISM Gene: ISM_11255: DNA polymerase III alpha subunit (EC 2.7.7.7)	* Roseovarius sp. 217 Site: position = -46 score = 0.625792 sequence = GAACAAAACTGGAAC Gene: ROS217_05784: DNA polymerase III alpha subunit (EC 2.7.7.7)	Sulfitobacter sp. EE-36 Gene: EE36_00385: DNA polymerase III alpha subunit (EC 2.7.7.7)	Silicibacter TM1040 Gene: TM1040_0175: DNA polymerase III alpha subunit (EC 2.7.7.7)	Silicibacter pomeroyi DSS-3 Gene: SPO0670: DNA polymerase III alpha subunit (EC 2.7.7.7)	Roseobacter sp. MED193 Gene: MED193_05984: DNA polymerase III alpha subunit (EC 2.7.7.7)	Hyphomonas neptunium ATCC 15444 Gene: HNE_2466: DNA polymerase III alpha subunit (EC 2.7.7.7)	Oceanicaulis alexandrii HTCC2633	DNA polymerase III alpha subunit (EC 2.7.7.7)
CRON 2.
ruvC	* Rhodobacter sphaeroides 2.4.1 Site: position = -48 score = 4.97404 sequence = GTTCCCGCTTCGTGC Gene: RSP_0556: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Paracoccus denitrificans PD1222 Site: position = -44 score = 5.14624 sequence = GTTCGCCTTTCGTGC Gene: Pden_0696: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Jannaschia sp. CCS1 Site: position = 2 score = 5.19684 sequence = GTTCGCGTTTCGTGC Gene: Jann_0964: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Rhodobacterales bacterium HTCC2654 Site: position = -62 score = 5.19684 sequence = GTTCGCGTTTCGTGC Gene: RB2654_05712: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Oceanicola granulosus HTCC2516 Site: position = -50 score = 4.85623 sequence = GTTCGCTGTTTGTGC Gene: OG2516_07702: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Loktanella vestfoldensis SKA53 Site: position = -49 score = 5.30572 sequence = GTTCGCCTTTTGTGC Gene: SKA53_08611: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Oceanicola batsensis HTCC2597 Site: position = -61 score = 4.72409 sequence = GTTCACTATTCGTGC Gene: OB2597_15620: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Roseovarius nubinhibens ISM Site: position = -60 score = 5.15214 sequence = GTTCTTGTTTCGTGC Gene: ISM_03450: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Roseovarius sp. 217 Site: position = -51 score = 5.18402 sequence = GTTCCCGTTTCGTGC Gene: ROS217_22507: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Sulfitobacter sp. EE-36 Site: position = -56 score = 5.19684 sequence = GTTCGCGTTTCGTGC Gene: EE36_09705: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Silicibacter TM1040 Site: position = 4 score = 5.35632 sequence = GTTCGCGTTTTGTGC Gene: TM1040_2373: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Silicibacter pomeroyi DSS-3 Site: position = -60 score = 5.13342 sequence = GTTCCCCTTTCGTGC Gene: SPO3117: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Roseobacter sp. MED193 Site: position = -64 score = 5.30572 sequence = GTTCGCCTTTTGTGC Gene: MED193_09210: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	Hyphomonas neptunium ATCC 15444 Gene: HNE_0145: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Oceanicaulis alexandrii HTCC2633 Site: position = -38 score = 4.9189 sequence = GGTCGCGTTTTGTTC Gene: OA2633_07399: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
ruvA	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0555: Holliday junction DNA helicase RuvA	Paracoccus denitrificans PD1222 Gene: Pden_0695: Holliday junction DNA helicase RuvA	Jannaschia sp. CCS1 Gene: Jann_0965: Holliday junction DNA helicase RuvA	Rhodobacterales bacterium HTCC2654 Gene: RB2654_05707: Holliday junction DNA helicase RuvA	Oceanicola granulosus HTCC2516 Gene: OG2516_07697: Holliday junction DNA helicase RuvA	Loktanella vestfoldensis SKA53 Gene: SKA53_08606: Holliday junction DNA helicase RuvA	Oceanicola batsensis HTCC2597 Gene: OB2597_15625: Holliday junction DNA helicase RuvA	Roseovarius nubinhibens ISM Gene: ISM_03445: Holliday junction DNA helicase RuvA	Roseovarius sp. 217 Gene: ROS217_22502: Holliday junction DNA helicase RuvA	Sulfitobacter sp. EE-36 Gene: EE36_09710: Holliday junction DNA helicase RuvA	Silicibacter TM1040 Gene: TM1040_2372: Holliday junction DNA helicase RuvA	Silicibacter pomeroyi DSS-3 Gene: SPO3116: Holliday junction DNA helicase RuvA	2 Roseobacter sp. MED193 Gene: MED193_09205: Holliday junction DNA helicase RuvA Gene: MED193_09200: Holliday junction DNA helicase RuvA	Hyphomonas neptunium ATCC 15444 Gene: HNE_0146: Holliday junction DNA helicase RuvA	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_07394: Holliday junction DNA helicase RuvA	Holliday junction DNA helicase RuvA
htpx	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0554: Zn-dependent protease with chaperone function	Paracoccus denitrificans PD1222 Gene: Pden_0694: Zn-dependent protease with chaperone function	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53 Gene: SKA53_08161: Zn-dependent protease with chaperone function	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_16735: Zn-dependent protease with chaperone function	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444 Gene: HNE_3367: Zn-dependent protease with chaperone function	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_10834: Zn-dependent protease with chaperone function	Zn-dependent protease with chaperone function
ruvB	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0553: Holliday junction DNA helicase RuvB	Paracoccus denitrificans PD1222 Gene: Pden_0693: Holliday junction DNA helicase RuvB	Jannaschia sp. CCS1 Gene: Jann_0966: Holliday junction DNA helicase RuvB	Rhodobacterales bacterium HTCC2654 Gene: RB2654_05702: Holliday junction DNA helicase RuvB	Oceanicola granulosus HTCC2516 Gene: OG2516_07692: Holliday junction DNA helicase RuvB	Loktanella vestfoldensis SKA53 Gene: SKA53_08601: Holliday junction DNA helicase RuvB	Oceanicola batsensis HTCC2597 Gene: OB2597_15630: Holliday junction DNA helicase RuvB	Roseovarius nubinhibens ISM Gene: ISM_03440: Holliday junction DNA helicase RuvB	Roseovarius sp. 217 Gene: ROS217_22497: Holliday junction DNA helicase RuvB	Sulfitobacter sp. EE-36 Gene: EE36_09715: Holliday junction DNA helicase RuvB	Silicibacter TM1040 Gene: TM1040_2371: Holliday junction DNA helicase RuvB	Silicibacter pomeroyi DSS-3 Gene: SPO3115: Holliday junction DNA helicase RuvB	Roseobacter sp. MED193 Gene: MED193_09195: Holliday junction DNA helicase RuvB	Hyphomonas neptunium ATCC 15444 Gene: HNE_0147: Holliday junction DNA helicase RuvB	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_07389: Holliday junction DNA helicase RuvB	Holliday junction DNA helicase RuvB
CRON 3.
uvrA	* Rhodobacter sphaeroides 2.4.1 Site: position = -92 score = 4.77055 sequence = GTTCATACTATGTTC Gene: RSP_2966: Excinuclease ABC subunit A	* Paracoccus denitrificans PD1222 Site: position = -81 score = 4.66144 sequence = GTTCCTGTGATGTTC Gene: Pden_2252: Excinuclease ABC subunit A	* Jannaschia sp. CCS1 Site: position = -82 score = 4.52623 sequence = GTTCCTGAAACGTTC Gene: Jann_1723: Excinuclease ABC subunit A	* Rhodobacterales bacterium HTCC2654 Site: position = -81 score = 4.88113 sequence = GTTCACACTTCGTTC Gene: RB2654_04776: Excinuclease ABC subunit A	* Oceanicola granulosus HTCC2516 Site: position = -80 score = 5.17369 sequence = GTTCGCGCTATGTTC Gene: OG2516_01124: Excinuclease ABC subunit A	* Loktanella vestfoldensis SKA53 Site: position = -78 score = 4.09327 sequence = GTTCTATGAATGTTC Gene: SKA53_02831: Excinuclease ABC subunit A	* Oceanicola batsensis HTCC2597 Site: position = -80 score = 4.84042 sequence = GTTCGCGCAATGTTC Gene: OB2597_01212: Excinuclease ABC subunit A	* Roseovarius nubinhibens ISM Site: position = -77 score = 4.85452 sequence = GTTCACAGTTTGTTC Gene: ISM_10865: Excinuclease ABC subunit A	* Roseovarius sp. 217 Site: position = -82 score = 4.91804 sequence = GTTCGCGCTCTGTTC Gene: ROS217_19127: Excinuclease ABC subunit A	* Sulfitobacter sp. EE-36 Site: position = -78 score = 5.0646 sequence = GTTCCCCTTGTGTTC Gene: EE36_13533: Excinuclease ABC subunit A	* Silicibacter TM1040 Site: position = -77 score = 4.85462 sequence = GTTCCCCCTCTGTTC Gene: TM1040_1098: Excinuclease ABC subunit A	* Silicibacter pomeroyi DSS-3 Site: position = -81 score = 5.1997 sequence = GTTCTCTTTACGTTC Gene: SPO2218: Excinuclease ABC subunit A	* Roseobacter sp. MED193 Site: position = -117 score = 4.79562 sequence = GTTCTTCTAACGTTC Gene: MED193_03447: Excinuclease ABC subunit A	* Hyphomonas neptunium ATCC 15444 Site: position = -95 score = 5.25059 sequence = GTTCACATTTTGTTC Gene: HNE_2765: Excinuclease ABC subunit A	* Oceanicaulis alexandrii HTCC2633 Site: position = -187 score = 4.68963 sequence = GTTCACATTCCGTTC Gene: OA2633_04146: Excinuclease ABC subunit A	Excinuclease ABC subunit A
CRON 4.
PF04055	* Rhodobacter sphaeroides 2.4.1 Site: position = -27 score = 4.85169 sequence = GTTCCCTTTGCGTTC Gene: RSP_2123: Radical SAM domain protein	* Paracoccus denitrificans PD1222 Site: position = -27 score = 4.79829 sequence = GTTCTCTAAATGTTC Gene: Pden_3951: Radical SAM domain protein	* Jannaschia sp. CCS1 Site: position = -9 score = 4.72747 sequence = GTTCTTCAAATGTTC Gene: Jann_2549: Radical SAM domain protein	* Rhodobacterales bacterium HTCC2654 Site: position = -20 score = 4.54277 sequence = GTTCTACTAATGTTC Gene: RB2654_02045: Radical SAM domain protein	* Oceanicola granulosus HTCC2516 Site: position = -30 score = 5.4342 sequence = GTTCTTCTTTTGTTC Gene: OG2516_06172: Radical SAM domain protein	Loktanella vestfoldensis SKA53	* Oceanicola batsensis HTCC2597 Site: position = -27 score = 5.02592 sequence = GTTCTCTTAATGTTC Gene: OB2597_03227: Radical SAM domain protein	* Roseovarius nubinhibens ISM Site: position = -27 score = 5.13342 sequence = GTTCGCGGTTTGTTC Gene: ISM_13455: Radical SAM domain protein	* Roseovarius sp. 217 Site: position = 6 score = 5.13155 sequence = GTTCTCTATATGTTC Gene: ROS217_19572: Radical SAM domain protein	* Sulfitobacter sp. EE-36 Site: position = -27 score = 5.02701 sequence = GTTCCTAATTTGTTC Gene: EE36_15677: Radical SAM domain protein	* Silicibacter TM1040 Site: position = -39 score = 5.15315 sequence = GTTCTTTATTTGTTC Gene: TM1040_1469: Radical SAM domain protein	Silicibacter pomeroyi DSS-3 Gene: SPO2159: Radical SAM domain protein	* Roseobacter sp. MED193 Site: position = -39 score = 5.20657 sequence = GTTCTTCATTTGTTC Gene: MED193_22781: Radical SAM domain protein	* Hyphomonas neptunium ATCC 15444 Site: position = -100 score = 5.27482 sequence = GTTCTTGCTTTGTTC Gene: HNE_1903: Radical SAM domain protein	* Oceanicaulis alexandrii HTCC2633 Site: position = -9 score = 5.11134 sequence = GTTCTTGATATGTTC Gene: OA2633_14191: Radical SAM domain protein	Radical SAM domain protein
CRON 5.
lexA	Rhodobacter sphaeroides 2.4.1 Gene: RSP_1997: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Paracoccus denitrificans PD1222 Site: position = -47 score = 1.41506 sequence = GAACAATCAACGAAC Gene: Pden_2142: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Jannaschia sp. CCS1 Site: position = -77 score = 1.32548 sequence = GAACATACCCTGAAC Gene: Jann_1874: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Rhodobacterales bacterium HTCC2654 Site: position = -83 score = -0.368622 sequence = ACACGAAACGAGAAC Gene: RB2654_04726: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Oceanicola granulosus HTCC2516 Site: position = -70 score = -0.509719 sequence = ACACAAAACGGGAAC Gene: OG2516_03218: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Loktanella vestfoldensis SKA53 Site: position = -32 score = 0.022675 sequence = GAACATAAGCAAAAC Site: position = -54 score = -0.389661 sequence = ACACAAAAGGGGAAC Gene: SKA53_02996: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Oceanicola batsensis HTCC2597 Site: position = -63 score = 0.417118 sequence = ACACAAAACATGAAC Gene: OB2597_01402: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Roseovarius nubinhibens ISM Site: position = -58 score = -0.509719 sequence = ACACAAAACGAGAAC Gene: ISM_14765: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Roseovarius sp. 217 Site: position = -58 score = -0.509719 sequence = ACACAAAACGGGAAC Gene: ROS217_21392: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Sulfitobacter sp. EE-36 Site: position = -56 score = -0.254066 sequence = ACACAAAACAGGAAC Gene: EE36_16202: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Silicibacter TM1040 Site: position = -58 score = -0.509719 sequence = ACACAAAACGGGAAC Site: position = -83 score = 4.58627 sequence = GTTCCCCTTATGACC Gene: TM1040_1135: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Silicibacter pomeroyi DSS-3 Site: position = -59 score = -0.254066 sequence = ACACAAAACAAGAAC Gene: SPO2154: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Roseobacter sp. MED193 Site: position = -47 score = 1.5479 sequence = GAACATGAATAGAAC Site: position = -58 score = -0.509719 sequence = ACACAAAACGGGAAC Gene: MED193_03687: SOS-response repressor and protease LexA (EC 3.4.21.88)	Hyphomonas neptunium ATCC 15444 Gene: HNE_1786: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Oceanicaulis alexandrii HTCC2633 Site: position = -27 score = 4.72002 sequence = GTTTCTATTTTGTTC Gene: OA2633_02671: SOS-response repressor and protease LexA (EC 3.4.21.88)	SOS-response repressor and protease LexA (EC 3.4.21.88)
CRON 6.
PF06319	* Rhodobacter sphaeroides 2.4.1 Site: position = 10 score = 4.45562 sequence = GTTCCCTGTCCGTTC Gene: RSP_0751: Transcription elongation factor	* Paracoccus denitrificans PD1222 Site: position = -26 score = 4.82258 sequence = GTTTCCGTTTCGTTC Gene: Pden_1550: Transcription elongation factor	* Jannaschia sp. CCS1 Site: position = -26 score = 5.00454 sequence = GTTCACCTATTGTTC Gene: Jann_3406: Transcription elongation factor	* Rhodobacterales bacterium HTCC2654 Site: position = -26 score = 4.8275 sequence = GTTCACGAATTGTTC Gene: RB2654_05485: Transcription elongation factor	* Oceanicola granulosus HTCC2516 Site: position = -27 score = 4.93147 sequence = GTTTCCCTTTTGTTC Gene: OG2516_05778: Transcription elongation factor	* Loktanella vestfoldensis SKA53 Site: position = -26 score = 5.00454 sequence = GTTCACCTATTGTTC Gene: SKA53_02001: Transcription elongation factor	* Oceanicola batsensis HTCC2597 Site: position = -26 score = 4.57765 sequence = GTTCACTAAATGTTC Gene: OB2597_02052: Transcription elongation factor	* Roseovarius nubinhibens ISM Site: position = -26 score = 5.14722 sequence = GTTCCCGCTTCGTTC Gene: ISM_00090: Transcription elongation factor	* Roseovarius sp. 217 Site: position = -26 score = 5.00919 sequence = GTTCGTGGTTTGTTC Gene: ROS217_03665: Transcription elongation factor	* Sulfitobacter sp. EE-36 Site: position = -26 score = 4.70327 sequence = GTTCATGAATTGTTC Gene: EE36_02883: Transcription elongation factor	* Silicibacter TM1040 Site: position = -170 score = 4.72348 sequence = GTTCACTAATTGTTC Gene: TM1040_2122: Transcription elongation factor	* Silicibacter pomeroyi DSS-3 Site: position = -20 score = 5.00454 sequence = GTTCACCTATTGTTC Gene: SPO1766: Transcription elongation factor	* Roseobacter sp. MED193 Site: position = -26 score = 5.17175 sequence = GTTCTCTTATTGTTC Gene: MED193_08438: Transcription elongation factor	Hyphomonas neptunium ATCC 15444 Gene: HNE_3451: Transcription elongation factor	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_09489: Transcription elongation factor	Transcription elongation factor
CRON 7.
rmuC	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	* Hyphomonas neptunium ATCC 15444 Site: position = -41 score = 4.57641 sequence = GTTCCGATTATGTTC Gene: HNE_0511: DNA recombination protein RmuC	* Oceanicaulis alexandrii HTCC2633 Site: position = -37 score = 4.7466 sequence = GGTCCCGTTTCGTTC Gene: OA2633_12765: DNA recombination protein RmuC	DNA recombination protein RmuC
CRON 8.
radA	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2456: DNA repair protein RadA	Paracoccus denitrificans PD1222 Gene: Pden_3941: DNA repair protein RadA	Jannaschia sp. CCS1 Gene: Jann_1712: DNA repair protein RadA	Rhodobacterales bacterium HTCC2654 Gene: RB2654_02269: DNA repair protein RadA	Oceanicola granulosus HTCC2516 Gene: OG2516_15619: DNA repair protein RadA	Loktanella vestfoldensis SKA53 Gene: SKA53_02581: DNA repair protein RadA	Oceanicola batsensis HTCC2597 Gene: OB2597_00495: DNA repair protein RadA	Roseovarius nubinhibens ISM Gene: ISM_15830: DNA repair protein RadA	Roseovarius sp. 217 Gene: ROS217_20382: DNA repair protein RadA	* Sulfitobacter sp. EE-36 Site: position = -29 score = 4.72149 sequence = GTTTCCCCTTTGTTC Gene: EE36_16347: DNA repair protein RadA	Silicibacter TM1040 Gene: TM1040_1784: DNA repair protein RadA	Silicibacter pomeroyi DSS-3 Gene: SPO2674: DNA repair protein RadA	Roseobacter sp. MED193 Gene: MED193_06804: DNA repair protein RadA	* Hyphomonas neptunium ATCC 15444 Site: position = -294 score = 4.26663 sequence = GTCCATTTTTCGTTC Gene: HNE_0720: DNA repair protein RadA	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_00845: DNA repair protein RadA	DNA repair protein RadA
CRON 9.
uvrD	* Rhodobacter sphaeroides 2.4.1 Site: position = -56 score = 0.746879 sequence = GAACGATTGCGGAAC Gene: RSP_2092: ATP-dependent DNA helicase II	Paracoccus denitrificans PD1222 Gene: Pden_4295: ATP-dependent DNA helicase II	* Jannaschia sp. CCS1 Site: position = -56 score = 1.49268 sequence = GAACAATCTGCGAAC Gene: Jann_2777: ATP-dependent DNA helicase II	* Rhodobacterales bacterium HTCC2654 Site: position = -111 score = 1.32548 sequence = GAACATACCCTGAAC Gene: RB2654_21543: ATP-dependent DNA helicase II	* Oceanicola granulosus HTCC2516 Site: position = -57 score = -0.0641964 sequence = GAACAGAGCGGGAAC Gene: OG2516_00125: ATP-dependent DNA helicase II	* Loktanella vestfoldensis SKA53 Site: position = -55 score = 0.766889 sequence = GAACGGAAGTAGAAC Gene: SKA53_07341: ATP-dependent DNA helicase II	Oceanicola batsensis HTCC2597 Gene: OB2597_16110: ATP-dependent DNA helicase II	* Roseovarius nubinhibens ISM Site: position = -56 score = 0.395804 sequence = GAACAATCGCGGAAC Gene: ISM_13365: ATP-dependent DNA helicase II	* Roseovarius sp. 217 Site: position = -56 score = 0.787447 sequence = GAACAATCCCCGAAC Gene: ROS217_21917: ATP-dependent DNA helicase II	* Sulfitobacter sp. EE-36 Site: position = -55 score = 2.11499 sequence = GAACATTTTGCGAAC Gene: EE36_17037: ATP-dependent DNA helicase II	* Silicibacter TM1040 Site: position = -57 score = 0.748084 sequence = GAACGGAGCGTGAAC Gene: TM1040_2024: ATP-dependent DNA helicase II	* Silicibacter pomeroyi DSS-3 Site: position = -113 score = 1.05095 sequence = GAACAAGCCGTGAAC Gene: SPO1174: ATP-dependent DNA helicase II	* Roseobacter sp. MED193 Site: position = -57 score = 1.32118 sequence = GAACAGAATGCGAAC Gene: MED193_07538: ATP-dependent DNA helicase II	* Hyphomonas neptunium ATCC 15444 Site: position = -138 score = -0.893694 sequence = GAAAAAAGCGCAAAC Gene: HNE_2938: ATP-dependent DNA helicase II	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_05351: ATP-dependent DNA helicase II	ATP-dependent DNA helicase II
CRON 10.
recA	* Rhodobacter sphaeroides 2.4.1 Site: position = -64 score = 1.09996 sequence = GAACATAGGGCGAAC Site: position = -92 score = 4.97517 sequence = GTTCGCCTTATGATC Gene: RSP_0452: Recombinase A	* Paracoccus denitrificans PD1222 Site: position = -77 score = 1.00035 sequence = GAACAACCCGTGAAC Gene: Pden_0597: Recombinase A	* Jannaschia sp. CCS1 Site: position = -98 score = 0.617766 sequence = GAACAAGACAAGAAC Site: position = -127 score = 4.8742 sequence = GTTCTTGTTTTGTTT Gene: Jann_1986: Recombinase A	* Rhodobacterales bacterium HTCC2654 Site: position = -56 score = 0.993872 sequence = GAACAAGAGGCGAAC Gene: RB2654_03904: Recombinase A	* Oceanicola granulosus HTCC2516 Site: position = -63 score = 0.993872 sequence = GAACAAGAGGCGAAC Site: position = -91 score = 4.9924 sequence = GTTCTCTTTTTGGTC Gene: OG2516_04603: Recombinase A	* Loktanella vestfoldensis SKA53 Site: position = -64 score = 1.2684 sequence = GAACATAAGGCGAAC Site: position = -91 score = 4.90627 sequence = GTTCATGTTTTGATC Gene: SKA53_03339: Recombinase A	* Oceanicola batsensis HTCC2597 Site: position = -68 score = 0.993872 sequence = GAACAAGAGGCGAAC Site: position = -91 score = 4.92159 sequence = GTTCTTCTTTTGGTC Gene: OB2597_01672: Recombinase A	* Roseovarius nubinhibens ISM Site: position = -90 score = 0.703157 sequence = GAACAGCACGCGAAC Site: position = -118 score = 5.29805 sequence = GTTCTCATTTTGTGC Gene: ISM_14955: Recombinase A	* Roseovarius sp. 217 Site: position = -66 score = 0.993872 sequence = GAACAAGAGGCGAAC Site: position = -94 score = 4.91895 sequence = GTTCTCTCTTTGTCC Gene: ROS217_20887: Recombinase A	* Sulfitobacter sp. EE-36 Site: position = -82 score = 1.09581 sequence = GAACATAGAAAGAAC Site: position = -104 score = 5.11334 sequence = GTTCTCATTTTGATC Gene: EE36_14243: Recombinase A	* Silicibacter TM1040 Site: position = -72 score = 0.482171 sequence = GAACAAGAGGAGAAC Site: position = -94 score = 4.75082 sequence = GTTCTTGTTTTGACC Gene: TM1040_1230: Recombinase A	* Silicibacter pomeroyi DSS-3 Site: position = -87 score = 1.15335 sequence = GAACAAGAGGTGAAC Site: position = -109 score = 5.14712 sequence = GTTCTCTTTTTGATC Gene: SPO2034: Recombinase A	* Roseobacter sp. MED193 Site: position = -93 score = 4.82446 sequence = GTTCTCCTTTTGACC Gene: MED193_04366: Recombinase A	* Hyphomonas neptunium ATCC 15444 Site: position = -128 score = 4.64785 sequence = GTTTCTGCTTTGTTC Gene: HNE_2742: Recombinase A	* Oceanicaulis alexandrii HTCC2633 Site: position = -68 score = 1.54308 sequence = GAACAAAATAAGTAC Site: position = -86 score = 4.83148 sequence = GTTCCTGTTGCGTTC Gene: OA2633_04776: Recombinase A	Recombinase A
CRON 11.
umuD	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	* Sulfitobacter sp. EE-36 Site: position = -154 score = 1.36047 sequence = GAACACATAGAGAAC Gene: EE36_13253: DNA polymerase V, subunit UmuD	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	*2 Roseobacter sp. MED193 Site: position = -30 score = 0.17592 sequence = GAACAAAGGCAGAAC Gene: MED193_12418: DNA polymerase V, subunit UmuD Site: position = -44 score = 5.13855 sequence = GTTCACTTTATGTTC Gene: MED193_12443: DNA polymerase V, subunit UmuD	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	DNA polymerase V, subunit UmuD
umuC	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36 Gene: EE36_13258: DNA polymerase V, subunit UmuC	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	2 Roseobacter sp. MED193 Gene: MED193_12423: DNA polymerase V, subunit UmuC Gene: MED193_12438: DNA polymerase V, subunit UmuC	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	DNA polymerase V, subunit UmuC

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