Regulon of LexA in Roseovarius nubinhibens ISM
| Regulator type: | Transcription factor |
| TF locus tag: | ISM_14765 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Rhodobacterales
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -56
Score: 0.4 Sequence: GAACAATCGCGGAAC
Locus tag: ISM_13365
Name: uvrD Funciton: ATP-dependent DNA helicase II |
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uvrD
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ATP-dependent DNA helicase II
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Position: -58
Score: -0.5 Sequence: ACACAAAACGAGAAC
Locus tag: ISM_14765
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Position: -60
Score: 5.2 Sequence: GTTCTTGTTTCGTGC
Locus tag: ISM_03450
Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: ISM_03445
Name: ruvA Funciton: Holliday junction DNA helicase RuvA
Locus tag: ISM_03440
Name: ruvB Funciton: Holliday junction DNA helicase RuvB |
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ruvC
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Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
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ruvA
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Holliday junction DNA helicase RuvA
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ruvB
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Holliday junction DNA helicase RuvB
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Position: -77
Score: 4.9 Sequence: GTTCACAGTTTGTTC
Locus tag: ISM_10865
Name: uvrA Funciton: Excinuclease ABC subunit A |
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uvrA
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Excinuclease ABC subunit A
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Position: -27
Score: 5.1 Sequence: GTTCGCGGTTTGTTC
Locus tag: ISM_13455
Name: PF04055 Funciton: Radical SAM domain protein |
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PF04055
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Radical SAM domain protein
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Position: -118
Score: 5.3 Sequence: GTTCTCATTTTGTGC
Position: -90
Score: 0.7 Sequence: GAACAGCACGCGAAC
Locus tag: ISM_14955
Name: recA Funciton: Recombinase A |
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recA
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Recombinase A
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Position: -26
Score: 5.1 Sequence: GTTCCCGCTTCGTTC
Locus tag: ISM_00090
Name: PF06319 Funciton: Transcription elongation factor |
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PF06319
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Transcription elongation factor
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |