Regulon of LexA in Paracoccus denitrificans PD1222
| Regulator type: | Transcription factor |
| TF locus tag: | Pden_2142 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Rhodobacterales
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -56
Score: 0.7 Sequence: GAACAAATCAGGAAC
Locus tag: Pden_4289
Name: imuA Funciton: Predicted RecA/RadA recombinase
Locus tag: Pden_4290
Name: imuB Funciton: DNA polymerase-like protein PA0670
Locus tag: Pden_4291
Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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imuA
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Predicted RecA/RadA recombinase
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imuB
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DNA polymerase-like protein PA0670
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dnaE2
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DNA polymerase III alpha subunit (EC 2.7.7.7)
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Position: -47
Score: 1.4 Sequence: GAACAATCAACGAAC
Locus tag: Pden_2142
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Position: -77
Score: 1 Sequence: GAACAACCCGTGAAC
Locus tag: Pden_0597
Name: recA Funciton: Recombinase A |
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recA
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Recombinase A
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Position: -44
Score: 5.1 Sequence: GTTCGCCTTTCGTGC
Locus tag: Pden_0696
Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: Pden_0695
Name: ruvA Funciton: Holliday junction DNA helicase RuvA
Locus tag: Pden_0694
Name: htpx Funciton: Zn-dependent protease with chaperone function
Locus tag: Pden_0693
Name: ruvB Funciton: Holliday junction DNA helicase RuvB |
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ruvC
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Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
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ruvA
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Holliday junction DNA helicase RuvA
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htpx
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Zn-dependent protease with chaperone function
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ruvB
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Holliday junction DNA helicase RuvB
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Position: -81
Score: 4.7 Sequence: GTTCCTGTGATGTTC
Locus tag: Pden_2252
Name: uvrA Funciton: Excinuclease ABC subunit A |
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uvrA
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Excinuclease ABC subunit A
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Position: -27
Score: 4.8 Sequence: GTTCTCTAAATGTTC
Locus tag: Pden_3951
Name: PF04055 Funciton: Radical SAM domain protein |
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PF04055
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Radical SAM domain protein
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Position: -26
Score: 4.8 Sequence: GTTTCCGTTTCGTTC
Locus tag: Pden_1550
Name: PF06319 Funciton: Transcription elongation factor |
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PF06319
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Transcription elongation factor
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |