Regulon of LexA in Paracoccus denitrificans PD1222

Properties
Regulator type:	Transcription factor
TF locus tag:	Pden_2142
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Regulog:	LexA - Rhodobacterales
Statistics of regulated genes:
- Genes	12
- Operons	7
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 128 sites [see more]

Member of regulog collections

By trascription factor - LexA
By taxonomy - Rhodobacterales
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Regulated operons
	Locus Tag	Name	Function
Position: -56 Score: 0.7 Sequence: GAACAAATCAGGAAC Locus tag: Pden_4289 Name: imuA Funciton: Predicted RecA/RadA recombinase Locus tag: Pden_4290 Name: imuB Funciton: DNA polymerase-like protein PA0670 Locus tag: Pden_4291 Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
	Pden_4289	imuA	Predicted RecA/RadA recombinase
	Pden_4290	imuB	DNA polymerase-like protein PA0670
	Pden_4291	dnaE2	DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -47 Score: 1.4 Sequence: GAACAATCAACGAAC Locus tag: Pden_2142 Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
	Pden_2142	lexA	SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -77 Score: 1 Sequence: GAACAACCCGTGAAC Locus tag: Pden_0597 Name: recA Funciton: Recombinase A
	Pden_0597	recA	Recombinase A
Position: -44 Score: 5.1 Sequence: GTTCGCCTTTCGTGC Locus tag: Pden_0696 Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) Locus tag: Pden_0695 Name: ruvA Funciton: Holliday junction DNA helicase RuvA Locus tag: Pden_0694 Name: htpx Funciton: Zn-dependent protease with chaperone function Locus tag: Pden_0693 Name: ruvB Funciton: Holliday junction DNA helicase RuvB
	Pden_0696	ruvC	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
	Pden_0695	ruvA	Holliday junction DNA helicase RuvA
	Pden_0694	htpx	Zn-dependent protease with chaperone function
	Pden_0693	ruvB	Holliday junction DNA helicase RuvB
Position: -81 Score: 4.7 Sequence: GTTCCTGTGATGTTC Locus tag: Pden_2252 Name: uvrA Funciton: Excinuclease ABC subunit A
	Pden_2252	uvrA	Excinuclease ABC subunit A
Position: -27 Score: 4.8 Sequence: GTTCTCTAAATGTTC Locus tag: Pden_3951 Name: PF04055 Funciton: Radical SAM domain protein
	Pden_3951	PF04055	Radical SAM domain protein
Position: -26 Score: 4.8 Sequence: GTTTCCGTTTCGTTC Locus tag: Pden_1550 Name: PF06319 Funciton: Transcription elongation factor
	Pden_1550	PF06319	Transcription elongation factor

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD