Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Jannaschia sp. CCS1

Properties
Regulator type: Transcription factor
TF locus tag: Jann_1874
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Rhodobacterales
Statistics of regulated genes:
- Genes 12
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 128 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -56
Score: 1.5
Sequence: GAACAATCTGCGAAC
Locus tag: Jann_2777
Name: uvrD
Funciton: ATP-dependent DNA helicase II
uvrD
ATP-dependent DNA helicase II

Position: 10
Score: 0.8
Sequence: GAACAAATAGGGAAC
Locus tag: Jann_1560
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: Jann_1559
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: Jann_1558
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
imuA
Predicted RecA/RadA recombinase
imuB
DNA polymerase-like protein PA0670
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)

Position: -77
Score: 1.3
Sequence: GAACATACCCTGAAC
Locus tag: Jann_1874
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)

Position: 2
Score: 5.2
Sequence: GTTCGCGTTTCGTGC
Locus tag: Jann_0964
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: Jann_0965
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: Jann_0966
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
ruvA
Holliday junction DNA helicase RuvA
ruvB
Holliday junction DNA helicase RuvB

Position: -82
Score: 4.5
Sequence: GTTCCTGAAACGTTC
Locus tag: Jann_1723
Name: uvrA
Funciton: Excinuclease ABC subunit A
uvrA
Excinuclease ABC subunit A

Position: -9
Score: 4.7
Sequence: GTTCTTCAAATGTTC
Locus tag: Jann_2549
Name: PF04055
Funciton: Radical SAM domain protein
PF04055
Radical SAM domain protein

Position: -127
Score: 4.9
Sequence: GTTCTTGTTTTGTTT
Position: -98
Score: 0.6
Sequence: GAACAAGACAAGAAC
Locus tag: Jann_1986
Name: recA
Funciton: Recombinase A
recA
Recombinase A

Position: -26
Score: 5
Sequence: GTTCACCTATTGTTC
Locus tag: Jann_3406
Name: PF06319
Funciton: Transcription elongation factor
PF06319
Transcription elongation factor
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