Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Oceanicola granulosus HTCC2516

Properties
Regulator type: Transcription factor
TF locus tag: OG2516_03218
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Rhodobacterales
Statistics of regulated genes:
- Genes 10
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 128 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -57
Score: -0.1
Sequence: GAACAGAGCGGGAAC
Locus tag: OG2516_00125
Name: uvrD
Funciton: ATP-dependent DNA helicase II
uvrD
ATP-dependent DNA helicase II

Position: -40
Score: 0.8
Sequence: GAACAAATGAAGAAC
Locus tag: OG2516_00284
Name: imuA
Funciton: Predicted RecA/RadA recombinase
imuA
Predicted RecA/RadA recombinase

Position: -70
Score: -0.5
Sequence: ACACAAAACGGGAAC
Locus tag: OG2516_03218
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)

Position: -50
Score: 4.9
Sequence: GTTCGCTGTTTGTGC
Locus tag: OG2516_07702
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: OG2516_07697
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: OG2516_07692
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
ruvA
Holliday junction DNA helicase RuvA
ruvB
Holliday junction DNA helicase RuvB

Position: -80
Score: 5.2
Sequence: GTTCGCGCTATGTTC
Locus tag: OG2516_01124
Name: uvrA
Funciton: Excinuclease ABC subunit A
uvrA
Excinuclease ABC subunit A

Position: -30
Score: 5.4
Sequence: GTTCTTCTTTTGTTC
Locus tag: OG2516_06172
Name: PF04055
Funciton: Radical SAM domain protein
PF04055
Radical SAM domain protein

Position: -91
Score: 5
Sequence: GTTCTCTTTTTGGTC
Position: -63
Score: 1
Sequence: GAACAAGAGGCGAAC
Locus tag: OG2516_04603
Name: recA
Funciton: Recombinase A
recA
Recombinase A

Position: -27
Score: 4.9
Sequence: GTTTCCCTTTTGTTC
Locus tag: OG2516_05778
Name: PF06319
Funciton: Transcription elongation factor
PF06319
Transcription elongation factor
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD