Regulon of LexA in Oceanicola granulosus HTCC2516
| Regulator type: | Transcription factor |
| TF locus tag: | OG2516_03218 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 8 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Rhodobacterales
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -57
Score: -0.1 Sequence: GAACAGAGCGGGAAC
Locus tag: OG2516_00125
Name: uvrD Funciton: ATP-dependent DNA helicase II |
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uvrD
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ATP-dependent DNA helicase II
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Position: -40
Score: 0.8 Sequence: GAACAAATGAAGAAC
Locus tag: OG2516_00284
Name: imuA Funciton: Predicted RecA/RadA recombinase |
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imuA
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Predicted RecA/RadA recombinase
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Position: -70
Score: -0.5 Sequence: ACACAAAACGGGAAC
Locus tag: OG2516_03218
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Position: -50
Score: 4.9 Sequence: GTTCGCTGTTTGTGC
Locus tag: OG2516_07702
Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: OG2516_07697
Name: ruvA Funciton: Holliday junction DNA helicase RuvA
Locus tag: OG2516_07692
Name: ruvB Funciton: Holliday junction DNA helicase RuvB |
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ruvC
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Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
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ruvA
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Holliday junction DNA helicase RuvA
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ruvB
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Holliday junction DNA helicase RuvB
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Position: -80
Score: 5.2 Sequence: GTTCGCGCTATGTTC
Locus tag: OG2516_01124
Name: uvrA Funciton: Excinuclease ABC subunit A |
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uvrA
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Excinuclease ABC subunit A
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Position: -30
Score: 5.4 Sequence: GTTCTTCTTTTGTTC
Locus tag: OG2516_06172
Name: PF04055 Funciton: Radical SAM domain protein |
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PF04055
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Radical SAM domain protein
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Position: -91
Score: 5 Sequence: GTTCTCTTTTTGGTC
Position: -63
Score: 1 Sequence: GAACAAGAGGCGAAC
Locus tag: OG2516_04603
Name: recA Funciton: Recombinase A |
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recA
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Recombinase A
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Position: -27
Score: 4.9 Sequence: GTTTCCCTTTTGTTC
Locus tag: OG2516_05778
Name: PF06319 Funciton: Transcription elongation factor |
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PF06319
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Transcription elongation factor
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |