Regulon of LexA in Loktanella vestfoldensis SKA53

Properties
Regulator type:	Transcription factor
TF locus tag:	SKA53_02996
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Regulog:	LexA - Rhodobacterales
Statistics of regulated genes:
- Genes	11
- Operons	7
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 128 sites [see more]

Member of regulog collections

By trascription factor - LexA
By taxonomy - Rhodobacterales
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Regulated operons
	Locus Tag	Name	Function
Position: -55 Score: 0.8 Sequence: GAACGGAAGTAGAAC Locus tag: SKA53_07341 Name: uvrD Funciton: ATP-dependent DNA helicase II
	SKA53_07341	uvrD	ATP-dependent DNA helicase II
Position: -59 Score: 1 Sequence: GAACAAAGCATGAAC Locus tag: SKA53_09714 Name: imuA Funciton: Predicted RecA/RadA recombinase Locus tag: SKA53_09709 Name: imuB Funciton: DNA polymerase-like protein PA0670 Locus tag: SKA53_09704 Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
	SKA53_09714	imuA	Predicted RecA/RadA recombinase
	SKA53_09709	imuB	DNA polymerase-like protein PA0670
	SKA53_09704	dnaE2	DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -54 Score: -0.4 Sequence: ACACAAAAGGGGAAC Position: -32 Score: 0 Sequence: GAACATAAGCAAAAC Locus tag: SKA53_02996 Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
	SKA53_02996	lexA	SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -49 Score: 5.3 Sequence: GTTCGCCTTTTGTGC Locus tag: SKA53_08611 Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) Locus tag: SKA53_08606 Name: ruvA Funciton: Holliday junction DNA helicase RuvA Locus tag: SKA53_08601 Name: ruvB Funciton: Holliday junction DNA helicase RuvB
	SKA53_08611	ruvC	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
	SKA53_08606	ruvA	Holliday junction DNA helicase RuvA
	SKA53_08601	ruvB	Holliday junction DNA helicase RuvB
Position: -78 Score: 4.1 Sequence: GTTCTATGAATGTTC Locus tag: SKA53_02831 Name: uvrA Funciton: Excinuclease ABC subunit A
	SKA53_02831	uvrA	Excinuclease ABC subunit A
Position: -91 Score: 4.9 Sequence: GTTCATGTTTTGATC Position: -64 Score: 1.3 Sequence: GAACATAAGGCGAAC Locus tag: SKA53_03339 Name: recA Funciton: Recombinase A
	SKA53_03339	recA	Recombinase A
Position: -26 Score: 5 Sequence: GTTCACCTATTGTTC Locus tag: SKA53_02001 Name: PF06319 Funciton: Transcription elongation factor
	SKA53_02001	PF06319	Transcription elongation factor

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD