Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Silicibacter TM1040

Properties
Regulator type: Transcription factor
TF locus tag: TM1040_1361
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Rhodobacterales
Statistics of regulated genes:
- Genes 19
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 92 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -159
Score: 4.3
Sequence: CGCCTAAATAACAAGCA
Locus tag: TM1040_2629
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: TM1040_2630
Name: amtB
Funciton: Ammonium transporter
TM1040_2629
glnK
Nitrogen regulatory protein P-II
TM1040_2630
amtB
Ammonium transporter
Position: -142
Score: 4.3
Sequence: CGCTTATTTTTTAATCA
Locus tag: TM1040_0388
Name: ureD
Funciton: Urease accessory protein, UreD
Locus tag: TM1040_0387
Name: ureA
Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: TM1040_0386
Name: ureB
Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: TM1040_0385
Name: ureC
Funciton: Urease, alpha subunit (EC 3.5.1.5)
Locus tag: TM1040_0384
Name: Jann_1753
Funciton: Conserved hypothetical protein
Locus tag: TM1040_0383
Name: TM1040_0383
Funciton: Conserved hypothetical protein
Locus tag: TM1040_0382
Name: ureE
Funciton: Urease accessory protein, UreE
Locus tag: TM1040_0381
Name: ureF
Funciton: Urease accessory protein, UreF
Locus tag: TM1040_0380
Name: ureG
Funciton: Urease accessory protein, UreG
TM1040_0388
ureD
Urease accessory protein, UreD
TM1040_0387
ureA
Urease, gamma subunit (EC 3.5.1.5)
TM1040_0386
ureB
Urease, beta subunit (EC 3.5.1.5)
TM1040_0385
ureC
Urease, alpha subunit (EC 3.5.1.5)
TM1040_0384
Jann_1753
Conserved hypothetical protein
TM1040_0383
TM1040_0383
Conserved hypothetical protein
TM1040_0382
ureE
Urease accessory protein, UreE
TM1040_0381
ureF
Urease accessory protein, UreF
TM1040_0380
ureG
Urease accessory protein, UreG
Position: -112
Score: 4.7
Sequence: TGCCAAAAAATTGTGCA
Locus tag: TM1040_2150
Name: gdhA
Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
TM1040_2150
gdhA
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Position: -146
Score: 4.3
Sequence: TGCCTATTTTTTAACCA
Locus tag: TM1040_1023
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: TM1040_1022
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
TM1040_1023
glnB
Nitrogen regulatory protein P-II
TM1040_1022
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -111
Score: 4.6
Sequence: TGATTAAAAAATAGGCA
Position: -18
Score: 4.7
Sequence: TGCATAAGGATTAAGCA
Locus tag: TM1040_1363
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: TM1040_1362
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: TM1040_1361
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: TM1040_1360
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: TM1040_1359
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
TM1040_1363
nifR3
Predicted oxidoreductase, FAD binding
TM1040_1362
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
TM1040_1361
ntrC
Nitrogen regulation protein NR(I), Fis family
TM1040_1360
ntrY
Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
TM1040_1359
ntrX
Nitrogen assimilation transcriptional regulator NtrX, Fis family
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