Regulon of NtrC in Silicibacter TM1040
| Regulator type: | Transcription factor |
| TF locus tag: | TM1040_1361 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 19 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -159
Score: 4.3 Sequence: CGCCTAAATAACAAGCA
Locus tag: TM1040_2629
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: TM1040_2630
Name: amtB Funciton: Ammonium transporter |
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glnK
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Nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Position: -142
Score: 4.3 Sequence: CGCTTATTTTTTAATCA
Locus tag: TM1040_0388
Name: ureD Funciton: Urease accessory protein, UreD
Locus tag: TM1040_0387
Name: ureA Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: TM1040_0386
Name: ureB Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: TM1040_0385
Name: ureC Funciton: Urease, alpha subunit (EC 3.5.1.5)
Locus tag: TM1040_0384
Name: Jann_1753 Funciton: Conserved hypothetical protein
Locus tag: TM1040_0383
Name: TM1040_0383 Funciton: Conserved hypothetical protein
Locus tag: TM1040_0382
Name: ureE Funciton: Urease accessory protein, UreE
Locus tag: TM1040_0381
Name: ureF Funciton: Urease accessory protein, UreF
Locus tag: TM1040_0380
Name: ureG Funciton: Urease accessory protein, UreG |
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ureD
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Urease accessory protein, UreD
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ureA
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Urease, gamma subunit (EC 3.5.1.5)
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ureB
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Urease, beta subunit (EC 3.5.1.5)
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ureC
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Urease, alpha subunit (EC 3.5.1.5)
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Jann_1753
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Conserved hypothetical protein
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TM1040_0383
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Conserved hypothetical protein
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ureE
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Urease accessory protein, UreE
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ureF
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Urease accessory protein, UreF
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ureG
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Urease accessory protein, UreG
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Position: -112
Score: 4.7 Sequence: TGCCAAAAAATTGTGCA
Locus tag: TM1040_2150
Name: gdhA Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
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gdhA
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NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
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Position: -146
Score: 4.3 Sequence: TGCCTATTTTTTAACCA
Locus tag: TM1040_1023
Name: glnB Funciton: Nitrogen regulatory protein P-II
Locus tag: TM1040_1022
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnB
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Nitrogen regulatory protein P-II
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -111
Score: 4.6 Sequence: TGATTAAAAAATAGGCA
Position: -18
Score: 4.7 Sequence: TGCATAAGGATTAAGCA
Locus tag: TM1040_1363
Name: nifR3 Funciton: Predicted oxidoreductase, FAD binding
Locus tag: TM1040_1362
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: TM1040_1361
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: TM1040_1360
Name: ntrY Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: TM1040_1359
Name: ntrX Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
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nifR3
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Predicted oxidoreductase, FAD binding
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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ntrY
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Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
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ntrX
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Nitrogen assimilation transcriptional regulator NtrX, Fis family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |