Profile of regulator NtrC in Rhodobacterales
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Rhodobacterales |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | |||||
| RSP_0889 | glnK | -159 | 4.5 | TGCATTAAAATTGGGCG | |
| RSP_2836 | nifR3 | -108 | 4.8 | CGCCCAATAAATGTGCA | |
| RSP_2836 | nifR3 | -18 | 4.4 | CGCACAAGGAATAGGCA | |
| RSP_0146 | glnB | -126 | 4.7 | TGCACAAAAATCGGGCG | |
| RSP_0310 | ureD | -124 | 4.2 | TGCCCGATCCTTGAGCG | |
| Paracoccus denitrificans PD1222 | |||||
| Pden_2032 | amtB2 | -130 | 4 | TGCCCTTATTTCGGGCA | |
| Pden_4131 | nifR3 | -121 | 4.3 | TGCCGACTATTTAGGCA | |
| Pden_4461 | glnB | -148 | 4.4 | CGCACATAATTCAGGCA | |
| Pden_4461 | glnB | -128 | 4.9 | TGCATAATATTCGGGCA | |
| Pden_4455 | nasT | -140 | 4 | CGCCCGAACCATGGGCA | |
| Jannaschia sp. CCS1 | |||||
| Jann_2236 | nifR3 | -54 | 5.1 | TGCTTAATTATTGTGCA | |
| Jann_2232 | amtB2 | -122 | 4.3 | CGCCCGAATAATAGGCG | |
| Jann_4056 | glnK | -183 | 4.4 | CGCACAAAAAACAGGCA | |
| Jann_1744 | ureD | -139 | 4.2 | TGCCTGCGAATTAGGCA | |
| Jann_1516 | glnB | -150 | 4.4 | TGATCATTTTTTAGGCG | |
| Jann_3038 | nasT | -56 | 4.6 | TGCACAATACTTAATCA | |
| Jann_3440 | gdhA | -141 | 4.4 | TGCCTGATATTTGCGCA | |
| Jann_3040 | nrtA | -269 | 4.7 | TGCCCAAAATTCGGGCG | |
| Jann_3041 | nrtB | -138 | 4.7 | CGCCCAAAAAATAGGCG | |
| Rhodobacterales bacterium HTCC2654 | |||||
| RB2654_10683 | glnK | -136 | 4.9 | TGACTAAAATTTGTGCA | |
| RB2654_10683 | glnK | -117 | 3.9 | TGCCCACAATGCGGGCA | |
| RB2654_03209 | nifR3 | -107 | 4.6 | TGCACAAATAACAGGCA | |
| RB2654_03209 | nifR3 | -17 | 4.5 | CGCACAAGGATTAAGCA | |
| RB2654_02324 | glnB | -127 | 5 | TGCATAAATATTGTGCG | |
| RB2654_12499 | nasT | -91 | 4.7 | TGCCTAGAAATTAGGCA | |
| RB2654_15836 | urtA | -248 | 4.5 | CGCACAATTATTAGGCT | |
| RB2654_15836 | urtA | -178 | 4 | TGCTCAAAAGGTATGCA | |
| RB2654_12489 | nrtA | -260 | 4.7 | CGCACAAGAATTAAGCA | |
| Oceanicola granulosus HTCC2516 | |||||
| OG2516_04471 | nifR3 | -110 | 4.4 | CGCACAAAAAACAGGCA | |
| OG2516_04471 | nifR3 | -18 | 4.7 | CGCACAATGTTTGAGCA | |
| OG2516_02329 | glnB | -148 | 4.4 | TGCCCAATCTTTGTGCC | |
| OG2516_01039 | urtA | -319 | 3.9 | CGCCCGATAATGGGGCG | |
| OG2516_01044 | ureD | -66 | 3.9 | CGCCCCATTATCGGGCG | |
| Loktanella vestfoldensis SKA53 | |||||
| SKA53_13946 | glnK | -144 | 4.7 | TGTACAATAATTGTGCA | |
| SKA53_13946 | glnK | -173 | 4.7 | TGCCTATTAATCAGGCA | |
| SKA53_04878 | nifR3 | -109 | 5 | TGACTAATTTTTAGGCA | |
| SKA53_14866 | ureD | -115 | 4.9 | TGCCTGAATTTTAGGCA | |
| SKA53_05805 | glnB | -146 | 4 | AGCATGTTATTTGTGCA | |
| SKA53_09869 | urtA | -280 | 4.6 | AGCATAAAAATTGTGCA | |
| Oceanicola batsensis HTCC2597 | |||||
| OB2597_07075 | ureD | -204 | 4.4 | CGCCCGTATTTTGGGCA | |
| OB2597_03097 | nifR3 | -16 | 4.8 | TGCACAAGGTTTAGGCA | |
| OB2597_03097 | nifR3 | -108 | 4.6 | TGTTCAAAATTTAGGCA | |
| OB2597_10701 | glnK | -165 | 4.4 | CGCACAAAAATTAATCG | |
| OB2597_10701 | glnK | -136 | 5.2 | TGCCCAATAATTGTGCA | |
| OB2597_15036 | urtA | -321 | 3.9 | TGCCTGTTTCTTGGGCT | |
| OB2597_15036 | urtA | -280 | 4.2 | TGCCCAAAAACTGATCA | |
| Roseovarius nubinhibens ISM | |||||
| ISM_08965 | glnK | -175 | 4.1 | CGCCCAATTTCTAGTCA | |
| ISM_16645 | nifR3 | -18 | 4.7 | TGCACAAGGATTAAGCA | |
| ISM_16645 | nifR3 | -108 | 5.1 | TGCTTAAATTTTGTGCA | |
| ISM_08965 | glnK | -146 | 4.4 | TGCACAAAAAATAGTCG | |
| ISM_05410 | glnB | -161 | 4.7 | TGCCCAAATTTCGGGCG | |
| ISM_05410 | glnB | -141 | 5 | TGCCTAAATAATGTGCA | |
| Roseovarius sp. 217 | |||||
| ROS217_04115 | glnK | -133 | 4.8 | TGCACATATTTTGAGCA | |
| ROS217_20467 | nifR3 | -113 | 5 | CGCCTAAAAATTAGGCG | |
| ROS217_05379 | ureD | -120 | 3.9 | TGCGCTAAAAATAGGCA | |
| ROS217_20467 | nifR3 | -21 | 4.8 | TGCACAAGGATTAGGCA | |
| ROS217_04115 | glnK | -162 | 4.7 | TGCATAAATTTTAGGCT | |
| ROS217_18110 | glnB | -128 | 4.8 | CGCCCATTATTTAGGCA | |
| ROS217_14776 | nasT | -111 | 4.5 | CGCCCATTTTATGGGCA | |
| Sulfitobacter sp. EE-36 | |||||
| EE36_08503 | ureD | -93 | 5.2 | TGCTCAAATATTAGGCA | |
| EE36_14997 | nifR3 | -111 | 5.3 | TGCCTAAATTTTAGGCA | |
| EE36_14997 | nifR3 | -18 | 4.5 | TGCACAAGGATTAAGCG | |
| EE36_08228 | glnK | -164 | 5.1 | CGCCCAATAATTGGGCA | |
| EE36_08228 | glnK | -135 | 4.8 | CGCCCAATAATCAGGCA | |
| EE36_12708 | glnB | -158 | 3.9 | TGCACAGATTTTAATCG | |
| EE36_07968 | nasT | -90 | 3.9 | TGCTCACTGTTTGGGCT | |
| EE36_02983 | gdhA | -130 | 4.6 | TGATTAAAATTTGTGCG | |
| EE36_10385 | urtA | -252 | 3.9 | TGCCAAAAAATGAGGCG | |
| Silicibacter TM1040 | |||||
| TM1040_0388 | ureD | -142 | 4.3 | CGCTTATTTTTTAATCA | |
| TM1040_1363 | nifR3 | -111 | 4.6 | TGATTAAAAAATAGGCA | |
| TM1040_1363 | nifR3 | -18 | 4.7 | TGCATAAGGATTAAGCA | |
| TM1040_2629 | glnK | -159 | 4.3 | CGCCTAAATAACAAGCA | |
| TM1040_1023 | glnB | -146 | 4.3 | TGCCTATTTTTTAACCA | |
| TM1040_2150 | gdhA | -112 | 4.7 | TGCCAAAAAATTGTGCA | |
| Silicibacter pomeroyi DSS-3 | |||||
| SPO2089 | nifR3 | -112 | 4.7 | CGATTAAAAATTAGGCA | |
| SPO2089 | nifR3 | -20 | 4.8 | TGCACAAGGATTAGGCA | |
| SPO3724 | glnK | -133 | 3.9 | TGTGCAAAAAATGTGCA | |
| SPO2294 | glnB | -144 | 4.8 | TGCACAATCCTTGTGCA | |
| SPO2294 | glnB | -105 | 3.9 | CGCCCAAAATTGCTGCA | |
| Roseobacter sp. MED193 | |||||
| MED193_04621 | nifR3 | -72 | 4.7 | CGCACAAGGATTAGGCA | |
| MED193_04621 | nifR3 | -165 | 5.2 | TGCTTAAAATTTAGGCA | |
| MED193_04641 | amtB2 | -130 | 4.2 | CGCCTATTCTTTAATCA | |
| MED193_15832 | glnK | -188 | 4.3 | CGCCTAATTTCTGGGCG | |
| MED193_07968 | ureD | -83 | 4.2 | TGCCCAAAAGTTACGCA | |
| MED193_05036 | glnB | -145 | 4.2 | CGCCTATTTTTAATGCA | |
| MED193_05036 | glnB | -125 | 4.4 | TGCCTACTTATTAATCA | |
| MED193_14852 | nasT | -91 | 4.6 | AGCCTAAAAATTGAGCA | |
| MED193_07963 | urtA | -201 | 4.2 | TGCGTAACTTTTGGGCA | |
| MED193_14842 | nrtA | -232 | 4.5 | TGCCCAAAAACTAGGCG | |
| Hyphomonas neptunium ATCC 15444 | |||||
| HNE_2013 | nifR3 | -10 | 4.5 | TGCCCATGATTTGTGCG | |
| HNE_2083 | glnB | -145 | 4.5 | CGCCCAATCTTTAATCA | |
| HNE_2083 | glnB | -124 | 4.1 | TGCACAATCTTTAATCT | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |