Regulog NtrC - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 12 | 4 |
| Paracoccus denitrificans PD1222 | 10 | 4 |
| Jannaschia sp. CCS1 | 33 | 9 |
| Rhodobacterales bacterium HTCC2654 | 25 | 6 |
| Oceanicola granulosus HTCC2516 | 19 | 4 |
| Loktanella vestfoldensis SKA53 | 22 | 5 |
| Oceanicola batsensis HTCC2597 | 21 | 4 |
| Roseovarius nubinhibens ISM | 9 | 3 |
| Roseovarius sp. 217 | 18 | 5 |
| Sulfitobacter sp. EE-36 | 24 | 7 |
| Silicibacter TM1040 | 19 | 5 |
| Silicibacter pomeroyi DSS-3 | 9 | 3 |
| Roseobacter sp. MED193 | 32 | 8 |
| Hyphomonas neptunium ATCC 15444 | 7 | 2 |
| Oceanicaulis alexandrii HTCC2633 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| glnB |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -126 score = 4.66863 sequence = TGCACAAAAATCGGGCG Gene: RSP_0146: Nitrogen regulatory protein P-II |
*
Paracoccus denitrificans PD1222 Site: position = -148 score = 4.38469 sequence = CGCACATAATTCAGGCA Site: position = -128 score = 4.86677 sequence = TGCATAATATTCGGGCA Gene: Pden_4461: Nitrogen regulatory protein P-II |
*
Jannaschia sp. CCS1 Site: position = -150 score = 4.37442 sequence = TGATCATTTTTTAGGCG Gene: Jann_1516: Nitrogen regulatory protein P-II |
*
Rhodobacterales bacterium HTCC2654 Site: position = -127 score = 5.00341 sequence = TGCATAAATATTGTGCG Gene: RB2654_02324: Nitrogen regulatory protein P-II |
*
Oceanicola granulosus HTCC2516 Site: position = -148 score = 4.40232 sequence = TGCCCAATCTTTGTGCC Gene: OG2516_02329: Nitrogen regulatory protein P-II |
*
Loktanella vestfoldensis SKA53 Site: position = -146 score = 3.98588 sequence = AGCATGTTATTTGTGCA Gene: SKA53_05805: Nitrogen regulatory protein P-II |
Gene: OB2597_03834: Nitrogen regulatory protein P-II |
*
Roseovarius nubinhibens ISM Site: position = -161 score = 4.70298 sequence = TGCCCAAATTTCGGGCG Site: position = -141 score = 4.95552 sequence = TGCCTAAATAATGTGCA Gene: ISM_05410: Nitrogen regulatory protein P-II |
*
Roseovarius sp. 217 Site: position = -128 score = 4.82994 sequence = CGCCCATTATTTAGGCA Gene: ROS217_18110: Nitrogen regulatory protein P-II |
*
Sulfitobacter sp. EE-36 Site: position = -158 score = 3.93182 sequence = TGCACAGATTTTAATCG Gene: EE36_12708: Nitrogen regulatory protein P-II |
*
Silicibacter TM1040 Site: position = -146 score = 4.33338 sequence = TGCCTATTTTTTAACCA Gene: TM1040_1023: Nitrogen regulatory protein P-II |
*
Silicibacter pomeroyi DSS-3 Site: position = -144 score = 4.76677 sequence = TGCACAATCCTTGTGCA Site: position = -105 score = 3.88794 sequence = CGCCCAAAATTGCTGCA Gene: SPO2294: Nitrogen regulatory protein P-II |
*
Roseobacter sp. MED193 Site: position = -145 score = 4.21858 sequence = CGCCTATTTTTAATGCA Site: position = -125 score = 4.36875 sequence = TGCCTACTTATTAATCA Gene: MED193_05036: Nitrogen regulatory protein P-II |
*
Hyphomonas neptunium ATCC 15444 Site: position = -145 score = 4.47154 sequence = CGCCCAATCTTTAATCA Site: position = -124 score = 4.05273 sequence = TGCACAATCTTTAATCT Gene: HNE_2083: Nitrogen regulatory protein P-II |
Gene: OA2633_03136: Nitrogen regulatory protein P-II |
Nitrogen regulatory protein P-II |
| glnA |
Gene: RSP_0147: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Pden_4462: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Jann_1515: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: RB2654_02319: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: OG2516_02324: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: SKA53_05810: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: OB2597_03839: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: ISM_05405: Glutamine synthetase type I (EC 6.3.1.2) |
2
Roseovarius sp. 217 Gene: ROS217_18105: Glutamine synthetase type I (EC 6.3.1.2) Gene: ROS217_18092: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: EE36_12698: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: TM1040_1022: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: SPO2295: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: MED193_05041: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: HNE_2084: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: OA2633_03141: Glutamine synthetase type I (EC 6.3.1.2) |
Glutamine synthetase type I (EC 6.3.1.2) |
| CRON 2. | ||||||||||||||||
| nifR3 |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -108 score = 4.77738 sequence = CGCCCAATAAATGTGCA Site: position = -18 score = 4.37723 sequence = CGCACAAGGAATAGGCA Gene: RSP_2836: Predicted oxidoreductase, FAD binding |
*
Paracoccus denitrificans PD1222 Site: position = -121 score = 4.31738 sequence = TGCCGACTATTTAGGCA Gene: Pden_4131: Predicted oxidoreductase, FAD binding |
*
Jannaschia sp. CCS1 Site: position = -54 score = 5.12997 sequence = TGCTTAATTATTGTGCA Gene: Jann_2236: Predicted oxidoreductase, FAD binding |
*
Rhodobacterales bacterium HTCC2654 Site: position = -107 score = 4.58462 sequence = TGCACAAATAACAGGCA Site: position = -17 score = 4.53169 sequence = CGCACAAGGATTAAGCA Gene: RB2654_03209: Predicted oxidoreductase, FAD binding |
*
Oceanicola granulosus HTCC2516 Site: position = -110 score = 4.40469 sequence = CGCACAAAAAACAGGCA Site: position = -18 score = 4.7268 sequence = CGCACAATGTTTGAGCA Gene: OG2516_04471: Predicted oxidoreductase, FAD binding |
*
Loktanella vestfoldensis SKA53 Site: position = -109 score = 4.98242 sequence = TGACTAATTTTTAGGCA Gene: SKA53_04878: Predicted oxidoreductase, FAD binding |
*
Oceanicola batsensis HTCC2597 Site: position = -16 score = 4.81932 sequence = TGCACAAGGTTTAGGCA Site: position = -108 score = 4.63409 sequence = TGTTCAAAATTTAGGCA Gene: OB2597_03097: Predicted oxidoreductase, FAD binding |
*
Roseovarius nubinhibens ISM Site: position = -18 score = 4.71162 sequence = TGCACAAGGATTAAGCA Site: position = -108 score = 5.08998 sequence = TGCTTAAATTTTGTGCA Gene: ISM_16645: Predicted oxidoreductase, FAD binding |
*
Roseovarius sp. 217 Site: position = -113 score = 4.95037 sequence = CGCCTAAAAATTAGGCG Site: position = -21 score = 4.83932 sequence = TGCACAAGGATTAGGCA Gene: ROS217_20467: Predicted oxidoreductase, FAD binding |
*
Sulfitobacter sp. EE-36 Site: position = -111 score = 5.29023 sequence = TGCCTAAATTTTAGGCA Site: position = -18 score = 4.53169 sequence = TGCACAAGGATTAAGCG Gene: EE36_14997: Predicted oxidoreductase, FAD binding |
*
Silicibacter TM1040 Site: position = -111 score = 4.57256 sequence = TGATTAAAAAATAGGCA Site: position = -18 score = 4.72982 sequence = TGCATAAGGATTAAGCA Gene: TM1040_1363: Predicted oxidoreductase, FAD binding |
*
Silicibacter pomeroyi DSS-3 Site: position = -112 score = 4.67479 sequence = CGATTAAAAATTAGGCA Site: position = -20 score = 4.83932 sequence = TGCACAAGGATTAGGCA Gene: SPO2089: Predicted oxidoreductase, FAD binding |
*
Roseobacter sp. MED193 Site: position = -72 score = 4.65939 sequence = CGCACAAGGATTAGGCA Site: position = -165 score = 5.16253 sequence = TGCTTAAAATTTAGGCA Gene: MED193_04621: Predicted oxidoreductase, FAD binding |
*
Hyphomonas neptunium ATCC 15444 Site: position = -10 score = 4.52408 sequence = TGCCCATGATTTGTGCG Gene: HNE_2013: Predicted oxidoreductase, FAD binding |
Gene: OA2633_02486: Predicted oxidoreductase, FAD binding |
Predicted oxidoreductase, FAD binding |
| ntrB |
Gene: RSP_2837: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Pden_4130: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Jann_2237: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: RB2654_03214: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: OG2516_04466: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: SKA53_04873: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: OB2597_03102: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: ISM_16640: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: ROS217_20462: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: EE36_15002: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: TM1040_1362: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: SPO2088: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: MED193_04616: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: HNE_2012: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: OA2633_02481: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
| ntrC |
Gene: RSP_2838: Nitrogen regulation protein NR(I), Fis family |
Gene: Pden_4129: Nitrogen regulation protein NR(I), Fis family |
Gene: Jann_2238: Nitrogen regulation protein NR(I), Fis family |
Gene: RB2654_03219: Nitrogen regulation protein NR(I), Fis family |
Gene: OG2516_04461: Nitrogen regulation protein NR(I), Fis family |
Gene: SKA53_04868: Nitrogen regulation protein NR(I), Fis family |
Gene: OB2597_03107: Nitrogen regulation protein NR(I), Fis family |
Gene: ISM_16635: Nitrogen regulation protein NR(I), Fis family |
Gene: ROS217_20457: Nitrogen regulation protein NR(I), Fis family |
Gene: EE36_15007: Nitrogen regulation protein NR(I), Fis family |
Gene: TM1040_1361: Nitrogen regulation protein NR(I), Fis family |
Gene: SPO2087: Nitrogen regulation protein NR(I), Fis family |
Gene: MED193_04611: Nitrogen regulation protein NR(I), Fis family |
Gene: HNE_2011: Nitrogen regulation protein NR(I), Fis family |
Gene: OA2633_02476: Nitrogen regulation protein NR(I), Fis family |
Nitrogen regulation protein NR(I), Fis family |
| ntrY |
Gene: RSP_2839: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: Pden_4128: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: Jann_2239: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: RB2654_03224: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: OG2516_04456: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: SKA53_04863: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: OB2597_03112: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: ISM_16630: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: ROS217_20452: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: EE36_15012: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: TM1040_1360: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: SPO2086: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: MED193_04606: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: HNE_2010: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: OA2633_02471: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
| ntrX |
Gene: RSP_2840: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: Pden_4127: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: Jann_2240: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: RB2654_03229: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: OG2516_04451: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: SKA53_04858: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: OB2597_03117: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: ISM_16625: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: ROS217_20447: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: EE36_15017: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: TM1040_1359: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: SPO2085: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: MED193_04601: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: HNE_2009: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: OA2633_02466: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Nitrogen assimilation transcriptional regulator NtrX, Fis family |
| CRON 3. | ||||||||||||||||
| glnK |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -159 score = 4.48253 sequence = TGCATTAAAATTGGGCG Gene: RSP_0889: Nitrogen regulatory protein P-II |
|
*
Jannaschia sp. CCS1 Site: position = -183 score = 4.40469 sequence = CGCACAAAAAACAGGCA Gene: Jann_4056: Nitrogen regulatory protein P-II |
*
Rhodobacterales bacterium HTCC2654 Site: position = -136 score = 4.88987 sequence = TGACTAAAATTTGTGCA Site: position = -117 score = 3.871 sequence = TGCCCACAATGCGGGCA Gene: RB2654_10683: Nitrogen regulatory protein P-II |
Gene: OG2516_12536: Nitrogen regulatory protein P-II |
*
Loktanella vestfoldensis SKA53 Site: position = -144 score = 4.67489 sequence = TGTACAATAATTGTGCA Site: position = -173 score = 4.67716 sequence = TGCCTATTAATCAGGCA Gene: SKA53_13946: Nitrogen regulatory protein P-II |
*
Oceanicola batsensis HTCC2597 Site: position = -165 score = 4.42231 sequence = CGCACAAAAATTAATCG Site: position = -136 score = 5.23946 sequence = TGCCCAATAATTGTGCA Gene: OB2597_10701: Nitrogen regulatory protein P-II |
*
Roseovarius nubinhibens ISM Site: position = -175 score = 4.13386 sequence = CGCCCAATTTCTAGTCA Site: position = -146 score = 4.44778 sequence = TGCACAAAAAATAGTCG Gene: ISM_08965: Nitrogen regulatory protein P-II |
*
Roseovarius sp. 217 Site: position = -133 score = 4.78962 sequence = TGCACATATTTTGAGCA Site: position = -162 score = 4.6915 sequence = TGCATAAATTTTAGGCT Gene: ROS217_04115: Nitrogen regulatory protein P-II |
*
Sulfitobacter sp. EE-36 Site: position = -164 score = 5.11387 sequence = CGCCCAATAATTGGGCA Site: position = -135 score = 4.76118 sequence = CGCCCAATAATCAGGCA Gene: EE36_08228: Nitrogen regulatory protein P-II |
*
Silicibacter TM1040 Site: position = -159 score = 4.34954 sequence = CGCCTAAATAACAAGCA Gene: TM1040_2629: Nitrogen regulatory protein P-II |
*
Silicibacter pomeroyi DSS-3 Site: position = -133 score = 3.87069 sequence = TGTGCAAAAAATGTGCA Gene: SPO3724: Nitrogen regulatory protein P-II |
*
Roseobacter sp. MED193 Site: position = -188 score = 4.28174 sequence = CGCCTAATTTCTGGGCG Gene: MED193_15832: Nitrogen regulatory protein P-II |
|
|
Nitrogen regulatory protein P-II |
| amtB |
|
|
Gene: Jann_4057: Ammonium transporter |
Gene: RB2654_10688: Ammonium transporter |
Gene: OG2516_12541: Ammonium transporter |
Gene: SKA53_13951: Ammonium transporter |
Gene: OB2597_10696: Ammonium transporter |
Gene: ISM_08960: Ammonium transporter |
Gene: ROS217_04110: Ammonium transporter |
Gene: EE36_08223: Ammonium transporter |
Gene: TM1040_2630: Ammonium transporter |
Gene: SPO3723: Ammonium transporter |
Gene: MED193_15827: Ammonium transporter |
Gene: HNE_3542: Ammonium transporter |
Gene: OA2633_04046: Ammonium transporter |
Ammonium transporter |
| amtB2 |
Gene: RSP_0888: Ammonium transporter |
*
Paracoccus denitrificans PD1222 Site: position = -130 score = 4.02554 sequence = TGCCCTTATTTCGGGCA Gene: Pden_2032: Ammonium transporter |
*
Jannaschia sp. CCS1 Site: position = -122 score = 4.2791 sequence = CGCCCGAATAATAGGCG Gene: Jann_2232: Ammonium transporter |
Gene: RB2654_03189: Ammonium transporter |
|
|
|
|
|
Gene: EE36_14977: Ammonium transporter |
|
Gene: SPO2093: Ammonium transporter |
*
Roseobacter sp. MED193 Site: position = -130 score = 4.20759 sequence = CGCCTATTCTTTAATCA Gene: MED193_04641: Ammonium transporter |
|
|
Ammonium transporter |
| CRON 4. | ||||||||||||||||
| nasT |
|
*
Paracoccus denitrificans PD1222 Site: position = -140 score = 4.02247 sequence = CGCCCGAACCATGGGCA Gene: Pden_4455: Nitrogen assimilation attenuator protein NasT |
*
Jannaschia sp. CCS1 Site: position = -56 score = 4.56885 sequence = TGCACAATACTTAATCA Gene: Jann_3038: Nitrogen assimilation attenuator protein NasT |
*
Rhodobacterales bacterium HTCC2654 Site: position = -91 score = 4.6598 sequence = TGCCTAGAAATTAGGCA Gene: RB2654_12499: Nitrogen assimilation attenuator protein NasT |
|
|
|
|
*
Roseovarius sp. 217 Site: position = -111 score = 4.52957 sequence = CGCCCATTTTATGGGCA Gene: ROS217_14776: Nitrogen assimilation attenuator protein NasT |
*
Sulfitobacter sp. EE-36 Site: position = -90 score = 3.91072 sequence = TGCTCACTGTTTGGGCT Gene: EE36_07968: Nitrogen assimilation attenuator protein NasT |
|
|
*
Roseobacter sp. MED193 Site: position = -91 score = 4.61993 sequence = AGCCTAAAAATTGAGCA Gene: MED193_14852: Nitrogen assimilation attenuator protein NasT |
2
Hyphomonas neptunium ATCC 15444 Gene: HNE_1618: Nitrogen assimilation attenuator protein NasT Gene: HNE_2233: Nitrogen assimilation attenuator protein NasT |
|
Nitrogen assimilation attenuator protein NasT |
| nrtA2 |
|
Gene: Pden_4454: Nitrate ABC transporter, substrate-binding component |
Gene: Jann_3039: Nitrate ABC transporter, substrate-binding component |
Gene: RB2654_12494: Nitrate ABC transporter, substrate-binding component |
|
|
|
|
Gene: ROS217_14781: Nitrate ABC transporter, substrate-binding component |
Gene: EE36_07973: Nitrate ABC transporter, substrate-binding component |
|
|
Gene: MED193_14847: Nitrate ABC transporter, substrate-binding component |
Gene: HNE_2232: Nitrate ABC transporter, substrate-binding component |
|
Nitrate ABC transporter, substrate-binding component |
| CRON 5. | ||||||||||||||||
| gdhA |
Gene: RSP_0398: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
|
*
Jannaschia sp. CCS1 Site: position = -141 score = 4.36472 sequence = TGCCTGATATTTGCGCA Gene: Jann_3440: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
|
Gene: OG2516_06267: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
Gene: SKA53_01906: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
Gene: OB2597_00970: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
Gene: ISM_12965: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
Gene: ROS217_17127: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
*
Sulfitobacter sp. EE-36 Site: position = -130 score = 4.58224 sequence = TGATTAAAATTTGTGCG Gene: EE36_02983: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
*
Silicibacter TM1040 Site: position = -112 score = 4.66308 sequence = TGCCAAAAAATTGTGCA Gene: TM1040_2150: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
Gene: SPO1743: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
2
Roseobacter sp. MED193 Gene: MED193_08583: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) Gene: MED193_14907: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
|
|
NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
| CRON 6. | ||||||||||||||||
| urtA |
Gene: RSP_0301: Urea ABC transporter, substrate-binding component |
Gene: Pden_4017: Urea ABC transporter, substrate-binding component |
|
*3
Rhodobacterales bacterium HTCC2654 Site: position = -248 score = 4.53335 sequence = CGCACAATTATTAGGCT Site: position = -178 score = 4.04382 sequence = TGCTCAAAAGGTATGCA Gene: RB2654_15836: Urea ABC transporter, substrate-binding component Gene: RB2654_15841: Urea ABC transporter, substrate-binding component Gene: RB2654_15846: Urea ABC transporter, substrate-binding component |
*
Oceanicola granulosus HTCC2516 Site: position = -319 score = 3.90011 sequence = CGCCCGATAATGGGGCG Gene: OG2516_01039: Urea ABC transporter, substrate-binding component |
*
Loktanella vestfoldensis SKA53 Site: position = -280 score = 4.63894 sequence = AGCATAAAAATTGTGCA Gene: SKA53_09869: Urea ABC transporter, substrate-binding component |
*
Oceanicola batsensis HTCC2597 Site: position = -321 score = 3.88125 sequence = TGCCTGTTTCTTGGGCT Site: position = -280 score = 4.16788 sequence = TGCCCAAAAACTGATCA Gene: OB2597_15036: Urea ABC transporter, substrate-binding component |
|
Gene: ROS217_05404: Urea ABC transporter, substrate-binding component |
*
Sulfitobacter sp. EE-36 Site: position = -252 score = 3.89277 sequence = TGCCAAAAAATGAGGCG Gene: EE36_10385: Urea ABC transporter, substrate-binding component |
|
Gene: SPO1710: Urea ABC transporter, substrate-binding component |
*
Roseobacter sp. MED193 Site: position = -201 score = 4.17543 sequence = TGCGTAACTTTTGGGCA Gene: MED193_07963: Urea ABC transporter, substrate-binding component |
|
|
Urea ABC transporter, substrate-binding component |
| urtB |
Gene: RSP_0300: Urea ABC transporter, permease component 1 |
Gene: Pden_4018: Urea ABC transporter, permease component 1 |
|
Gene: RB2654_15851: Urea ABC transporter, permease component 1 |
Gene: OG2516_01034: Urea ABC transporter, permease component 1 |
Gene: SKA53_09864: Urea ABC transporter, permease component 1 |
Gene: OB2597_15041: Urea ABC transporter, permease component 1 |
|
Gene: ROS217_05399: Urea ABC transporter, permease component 1 |
Gene: EE36_10390: Urea ABC transporter, permease component 1 |
|
Gene: SPO1709: Urea ABC transporter, permease component 1 |
Gene: MED193_07958: Urea ABC transporter, permease component 1 |
|
|
Urea ABC transporter, permease component 1 |
| urtB |
Gene: RSP_0299: Urea ABC transporter, permease component 2 |
Gene: Pden_4019: Urea ABC transporter, permease component 2 |
|
Gene: RB2654_15856: Urea ABC transporter, permease component 2 |
Gene: OG2516_01029: Urea ABC transporter, permease component 2 |
Gene: SKA53_09859: Urea ABC transporter, permease component 2 |
Gene: OB2597_15046: Urea ABC transporter, permease component 2 |
|
Gene: ROS217_05394: Urea ABC transporter, permease component 2 |
Gene: EE36_10395: Urea ABC transporter, permease component 2 |
|
Gene: SPO1708: Urea ABC transporter, permease component 2 |
Gene: MED193_07953: Urea ABC transporter, permease component 2 |
|
|
Urea ABC transporter, permease component 2 |
| urtD |
Gene: RSP_0298: Urea ABC transporter, ATP-binding component 1 |
Gene: Pden_4020: Urea ABC transporter, ATP-binding component 1 |
|
Gene: RB2654_15861: Urea ABC transporter, ATP-binding component 1 |
Gene: OG2516_01024: Urea ABC transporter, ATP-binding component 1 |
Gene: SKA53_09854: Urea ABC transporter, ATP-binding component 1 |
Gene: OB2597_15051: Urea ABC transporter, ATP-binding component 1 |
|
Gene: ROS217_05389: Urea ABC transporter, ATP-binding component 1 |
Gene: EE36_10400: Urea ABC transporter, ATP-binding component 1 |
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Gene: SPOA0447: Urea ABC transporter, ATP-binding component 1 |
Gene: MED193_07948: Urea ABC transporter, ATP-binding component 1 |
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Urea ABC transporter, ATP-binding component 1 |
| urtE |
Gene: RSP_0297: Urea ABC transporter, ATP-binding component 1 |
Gene: Pden_4021: Urea ABC transporter, ATP-binding component 1 |
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Gene: RB2654_15866: Urea ABC transporter, ATP-binding component 1 |
Gene: OG2516_01019: Urea ABC transporter, ATP-binding component 1 |
Gene: SKA53_09849: Urea ABC transporter, ATP-binding component 1 |
Gene: OB2597_15056: Urea ABC transporter, ATP-binding component 1 |
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Gene: ROS217_05384: Urea ABC transporter, ATP-binding component 1 |
Gene: EE36_10405: Urea ABC transporter, ATP-binding component 1 |
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Gene: SPO1707: Urea ABC transporter, ATP-binding component 1 |
Gene: MED193_07943: Urea ABC transporter, ATP-binding component 1 |
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Urea ABC transporter, ATP-binding component 1 |
| CRON 7. | ||||||||||||||||
| nrtA |
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*
Jannaschia sp. CCS1 Site: position = -269 score = 4.70298 sequence = TGCCCAAAATTCGGGCG Gene: Jann_3040: Nitrate ABC transporter, substrate-binding component |
*
Rhodobacterales bacterium HTCC2654 Site: position = -260 score = 4.71673 sequence = CGCACAAGAATTAAGCA Gene: RB2654_12489: Nitrate ABC transporter, substrate-binding component |
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Gene: ROS217_14786: Nitrate ABC transporter, substrate-binding component |
Gene: EE36_07978: Nitrate ABC transporter, substrate-binding component |
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*
Roseobacter sp. MED193 Site: position = -232 score = 4.46167 sequence = TGCCCAAAAACTAGGCG Gene: MED193_14842: Nitrate ABC transporter, substrate-binding component |
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Nitrate ABC transporter, substrate-binding component |
| nrtB |
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*
Jannaschia sp. CCS1 Site: position = -138 score = 4.65001 sequence = CGCCCAAAAAATAGGCG Gene: Jann_3041: Nitrate ABC transporter, permease component |
Gene: RB2654_12484: Nitrate ABC transporter, permease component |
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Gene: ROS217_14791: Nitrate ABC transporter, permease component |
Gene: EE36_07983: Nitrate ABC transporter, permease component |
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Gene: MED193_14837: Nitrate ABC transporter, permease component |
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Nitrate ABC transporter, permease component |
| nrtC |
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Gene: Jann_3042: Nitrate ABC transporter, ATP-binding component |
Gene: RB2654_12479: Nitrate ABC transporter, ATP-binding component |
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Gene: ROS217_14796: Nitrate ABC transporter, ATP-binding component |
Gene: EE36_07988: Nitrate ABC transporter, ATP-binding component |
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Gene: MED193_14832: Nitrate ABC transporter, ATP-binding component |
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Nitrate ABC transporter, ATP-binding component |
| nasD |
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Gene: Pden_4452: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: Jann_3043: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: RB2654_12469: Nitrite reductase, large subunit (EC 1.7.1.4) |
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Gene: ROS217_14801: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: EE36_07993: Nitrite reductase, large subunit (EC 1.7.1.4) |
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Gene: MED193_14827: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: HNE_2234: Nitrite reductase, large subunit (EC 1.7.1.4) |
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Nitrite reductase, large subunit (EC 1.7.1.4) |
| nasE |
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Gene: Pden_4451: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: Jann_3044: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: RB2654_12464: Nitrite reductase, small subunit (EC 1.7.1.4) |
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Gene: ROS217_14806: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: EE36_07998: Nitrite reductase, small subunit (EC 1.7.1.4) |
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Gene: MED193_14822: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: HNE_2235: Nitrite reductase, small subunit (EC 1.7.1.4) |
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Nitrite reductase, small subunit (EC 1.7.1.4) |
| nasA |
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Gene: Pden_4449: Assimilatory nitrate reductase large subunit (EC:1.7.99.4) |
Gene: Jann_3045: Assimilatory nitrate reductase large subunit (EC:1.7.99.4) |
Gene: RB2654_12459: Assimilatory nitrate reductase large subunit (EC:1.7.99.4) |
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Gene: ROS217_14811: Assimilatory nitrate reductase large subunit (EC:1.7.99.4) |
Gene: EE36_08003: Assimilatory nitrate reductase large subunit (EC:1.7.99.4) |
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Gene: MED193_14817: Assimilatory nitrate reductase large subunit (EC:1.7.99.4) |
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Assimilatory nitrate reductase large subunit (EC:1.7.99.4) |
| COG0547 |
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Gene: Jann_3046: Glycosyl transferase, family 3 |
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Gene: ROS217_14816: Glycosyl transferase, family 3 |
Gene: EE36_08008: Glycosyl transferase, family 3 |
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Gene: MED193_14812: Glycosyl transferase, family 3 |
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Glycosyl transferase, family 3 |
| cysG |
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Gene: Jann_3047: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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Gene: ROS217_14821: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: EE36_08013: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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Gene: MED193_14807: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
| hmp |
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Gene: RB2654_12474: Nitric oxide dioxygenase |
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Nitric oxide dioxygenase |
| CRON 8. | ||||||||||||||||
| ureD |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -124 score = 4.19692 sequence = TGCCCGATCCTTGAGCG Gene: RSP_0310: Urease accessory protein, UreD |
Gene: Pden_1212: Urease accessory protein, UreD |
*
Jannaschia sp. CCS1 Site: position = -139 score = 4.22005 sequence = TGCCTGCGAATTAGGCA Gene: Jann_1744: Urease accessory protein, UreD |
Gene: RB2654_09984: Urease accessory protein, UreD |
*
Oceanicola granulosus HTCC2516 Site: position = -66 score = 3.90011 sequence = CGCCCCATTATCGGGCG Gene: OG2516_01044: Urease accessory protein, UreD |
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Loktanella vestfoldensis SKA53 Site: position = -115 score = 4.91933 sequence = TGCCTGAATTTTAGGCA Gene: SKA53_14866: Urease accessory protein, UreD |
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Oceanicola batsensis HTCC2597 Site: position = -204 score = 4.42083 sequence = CGCCCGTATTTTGGGCA Gene: OB2597_07075: Urease accessory protein, UreD |
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Roseovarius sp. 217 Site: position = -120 score = 3.87825 sequence = TGCGCTAAAAATAGGCA Gene: ROS217_05379: Urease accessory protein, UreD |
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Sulfitobacter sp. EE-36 Site: position = -93 score = 5.16432 sequence = TGCTCAAATATTAGGCA Gene: EE36_08503: Urease accessory protein, UreD |
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Silicibacter TM1040 Site: position = -142 score = 4.26493 sequence = CGCTTATTTTTTAATCA Gene: TM1040_0388: Urease accessory protein, UreD |
Gene: SPO1711: Urease accessory protein, UreD |
*
Roseobacter sp. MED193 Site: position = -83 score = 4.17543 sequence = TGCCCAAAAGTTACGCA Gene: MED193_07968: Urease accessory protein, UreD |
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Urease accessory protein, UreD |
| ureA |
Gene: RSP_0309: Urease, gamma subunit (EC 3.5.1.5) |
Gene: Pden_1211: Urease, gamma subunit (EC 3.5.1.5) |
Gene: Jann_1745: Urease, gamma subunit (EC 3.5.1.5) |
Gene: RB2654_09979: Urease, gamma subunit (EC 3.5.1.5) |
Gene: OG2516_01049: Urease, gamma subunit (EC 3.5.1.5) |
Gene: SKA53_14871: Urease, gamma subunit (EC 3.5.1.5) |
Gene: OB2597_07070: Urease, gamma subunit (EC 3.5.1.5) |
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Gene: ROS217_05374: Urease, gamma subunit (EC 3.5.1.5) |
Gene: EE36_08498: Urease, gamma subunit (EC 3.5.1.5) |
Gene: TM1040_0387: Urease, gamma subunit (EC 3.5.1.5) |
Gene: SPO1712: Urease, gamma subunit (EC 3.5.1.5) |
Gene: MED193_07973: Urease, gamma subunit (EC 3.5.1.5) |
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Urease, gamma subunit (EC 3.5.1.5) |
| ureB |
Gene: RSP_0308: Urease, beta subunit (EC 3.5.1.5) |
Gene: Pden_1209: Urease, beta subunit (EC 3.5.1.5) |
Gene: Jann_1747: Urease, beta subunit (EC 3.5.1.5) |
Gene: RB2654_09969: Urease, beta subunit (EC 3.5.1.5) |
Gene: OG2516_01054: Urease, beta subunit (EC 3.5.1.5) |
Gene: SKA53_14876: Urease, beta subunit (EC 3.5.1.5) |
Gene: OB2597_07060: Urease, beta subunit (EC 3.5.1.5) |
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Gene: ROS217_05364: Urease, beta subunit (EC 3.5.1.5) |
Gene: EE36_08488: Urease, beta subunit (EC 3.5.1.5) |
Gene: TM1040_0386: Urease, beta subunit (EC 3.5.1.5) |
Gene: SPO1713: Urease, beta subunit (EC 3.5.1.5) |
Gene: MED193_07983: Urease, beta subunit (EC 3.5.1.5) |
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Urease, beta subunit (EC 3.5.1.5) |
| Jann_1748 |
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Gene: Jann_1748: protein of unknown function DUF1311 |
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protein of unknown function DUF1311 |
| Jann_1749 |
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Gene: Jann_1749: Twin-arginine translocation pathway signal |
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Twin-arginine translocation pathway signal |
| PF02627 |
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Gene: Jann_1750: Putative alkylhydroperoxidase |
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Putative alkylhydroperoxidase |
| Jann_1751 |
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Gene: Jann_1751: Hypothetical protein |
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Hypothetical protein |
| ureC |
Gene: RSP_6111: Urease, alpha subunit (EC 3.5.1.5) |
Gene: Pden_1208: Urease, alpha subunit (EC 3.5.1.5) |
Gene: Jann_1752: Urease, alpha subunit (EC 3.5.1.5) |
Gene: RB2654_09959: Urease, alpha subunit (EC 3.5.1.5) |
Gene: OG2516_01059: Urease, alpha subunit (EC 3.5.1.5) |
Gene: SKA53_14881: Urease, alpha subunit (EC 3.5.1.5) |
Gene: OB2597_07050: Urease, alpha subunit (EC 3.5.1.5) |
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Gene: ROS217_05359: Urease, alpha subunit (EC 3.5.1.5) |
Gene: EE36_08483: Urease, alpha subunit (EC 3.5.1.5) |
Gene: TM1040_0385: Urease, alpha subunit (EC 3.5.1.5) |
Gene: SPO1714: Urease, alpha subunit (EC 3.5.1.5) |
Gene: MED193_07988: Urease, alpha subunit (EC 3.5.1.5) |
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Urease, alpha subunit (EC 3.5.1.5) |
| Jann_1753 |
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Gene: Jann_1753: Conserved hypothetical protein |
Gene: RB2654_09944: Conserved hypothetical protein |
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Gene: TM1040_0384: Conserved hypothetical protein |
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Conserved hypothetical protein |
| ureE |
Gene: RSP_0304: Urease accessory protein, UreE |
Gene: Pden_1207: Urease accessory protein, UreE |
Gene: Jann_1754: Urease accessory protein, UreE |
Gene: RB2654_09939: Urease accessory protein, UreE |
Gene: OG2516_01064: Urease accessory protein, UreE |
Gene: SKA53_14891: Urease accessory protein, UreE |
Gene: OB2597_07040: Urease accessory protein, UreE |
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Gene: ROS217_05354: Urease accessory protein, UreE |
Gene: EE36_08478: Urease accessory protein, UreE |
Gene: TM1040_0382: Urease accessory protein, UreE |
Gene: SPO1715: Urease accessory protein, UreE |
Gene: MED193_07993: Urease accessory protein, UreE |
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Urease accessory protein, UreE |
| ureF |
Gene: RSP_0303: Urease accessory protein, UreF |
Gene: Pden_1206: Urease accessory protein, UreF |
Gene: Jann_1755: Urease accessory protein, UreF |
Gene: RB2654_09934: Urease accessory protein, UreF |
Gene: OG2516_01069: Urease accessory protein, UreF |
Gene: SKA53_14896: Urease accessory protein, UreF |
Gene: OB2597_07035: Urease accessory protein, UreF |
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Gene: ROS217_05349: Urease accessory protein, UreF |
Gene: EE36_08473: Urease accessory protein, UreF |
Gene: TM1040_0381: Urease accessory protein, UreF |
Gene: SPO1716: Urease accessory protein, UreF |
Gene: MED193_07998: Urease accessory protein, UreF |
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Urease accessory protein, UreF |
| ureG |
Gene: RSP_0302: Urease accessory protein, UreG |
Gene: Pden_1205: Urease accessory protein, UreG |
Gene: Jann_1756: Urease accessory protein, UreG |
Gene: RB2654_09929: Urease accessory protein, UreG |
Gene: OG2516_01074: Urease accessory protein, UreG |
Gene: SKA53_14901: Urease accessory protein, UreG |
Gene: OB2597_07030: Urease accessory protein, UreG |
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Gene: ROS217_05344: Urease accessory protein, UreG |
Gene: EE36_08468: Urease accessory protein, UreG |
Gene: TM1040_0380: Urease accessory protein, UreG |
Gene: SPO1717: Urease accessory protein, UreG |
Gene: MED193_08003: Urease accessory protein, UreG |
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Urease accessory protein, UreG |
| TM1040_0383 |
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Gene: SKA53_14886: Conserved hypothetical protein |
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Gene: TM1040_0383: Conserved hypothetical protein |
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Conserved hypothetical protein |
| OB2597_07055 |
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Gene: OB2597_07055: Hypothetical protein |
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Hypothetical protein |
| OB2597_07045 |
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Gene: RB2654_09924: Conserved hypothetical protein |
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Gene: OB2597_07045: Conserved hypothetical protein |
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Conserved hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |