Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Oceanicola granulosus HTCC2516

Properties
Regulator type: Transcription factor
TF locus tag: OG2516_04461
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Rhodobacterales
Statistics of regulated genes:
- Genes 19
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 92 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -319
Score: 3.9
Sequence: CGCCCGATAATGGGGCG
Locus tag: OG2516_01039
Name: urtA
Funciton: Urea ABC transporter, substrate-binding component
Locus tag: OG2516_01034
Name: urtB
Funciton: Urea ABC transporter, permease component 1
Locus tag: OG2516_01029
Name: urtB
Funciton: Urea ABC transporter, permease component 2
Locus tag: OG2516_01024
Name: urtD
Funciton: Urea ABC transporter, ATP-binding component 1
Locus tag: OG2516_01019
Name: urtE
Funciton: Urea ABC transporter, ATP-binding component 1
OG2516_01039
urtA
Urea ABC transporter, substrate-binding component
OG2516_01034
urtB
Urea ABC transporter, permease component 1
OG2516_01029
urtB
Urea ABC transporter, permease component 2
OG2516_01024
urtD
Urea ABC transporter, ATP-binding component 1
OG2516_01019
urtE
Urea ABC transporter, ATP-binding component 1
Position: -148
Score: 4.4
Sequence: TGCCCAATCTTTGTGCC
Locus tag: OG2516_02329
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: OG2516_02324
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
OG2516_02329
glnB
Nitrogen regulatory protein P-II
OG2516_02324
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -66
Score: 3.9
Sequence: CGCCCCATTATCGGGCG
Locus tag: OG2516_01044
Name: ureD
Funciton: Urease accessory protein, UreD
Locus tag: OG2516_01049
Name: ureA
Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: OG2516_01054
Name: ureB
Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: OG2516_01059
Name: ureC
Funciton: Urease, alpha subunit (EC 3.5.1.5)
Locus tag: OG2516_01064
Name: ureE
Funciton: Urease accessory protein, UreE
Locus tag: OG2516_01069
Name: ureF
Funciton: Urease accessory protein, UreF
Locus tag: OG2516_01074
Name: ureG
Funciton: Urease accessory protein, UreG
OG2516_01044
ureD
Urease accessory protein, UreD
OG2516_01049
ureA
Urease, gamma subunit (EC 3.5.1.5)
OG2516_01054
ureB
Urease, beta subunit (EC 3.5.1.5)
OG2516_01059
ureC
Urease, alpha subunit (EC 3.5.1.5)
OG2516_01064
ureE
Urease accessory protein, UreE
OG2516_01069
ureF
Urease accessory protein, UreF
OG2516_01074
ureG
Urease accessory protein, UreG
Position: -110
Score: 4.4
Sequence: CGCACAAAAAACAGGCA
Position: -18
Score: 4.7
Sequence: CGCACAATGTTTGAGCA
Locus tag: OG2516_04471
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: OG2516_04466
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: OG2516_04461
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: OG2516_04456
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: OG2516_04451
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
OG2516_04471
nifR3
Predicted oxidoreductase, FAD binding
OG2516_04466
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
OG2516_04461
ntrC
Nitrogen regulation protein NR(I), Fis family
OG2516_04456
ntrY
Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
OG2516_04451
ntrX
Nitrogen assimilation transcriptional regulator NtrX, Fis family
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