Regulon of NtrC in Loktanella vestfoldensis SKA53
| Regulator type: | Transcription factor |
| TF locus tag: | SKA53_04868 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 22 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -280
Score: 4.6 Sequence: AGCATAAAAATTGTGCA
Locus tag: SKA53_09869
Name: urtA Funciton: Urea ABC transporter, substrate-binding component
Locus tag: SKA53_09864
Name: urtB Funciton: Urea ABC transporter, permease component 1
Locus tag: SKA53_09859
Name: urtB Funciton: Urea ABC transporter, permease component 2
Locus tag: SKA53_09854
Name: urtD Funciton: Urea ABC transporter, ATP-binding component 1
Locus tag: SKA53_09849
Name: urtE Funciton: Urea ABC transporter, ATP-binding component 1 |
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urtA
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Urea ABC transporter, substrate-binding component
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urtB
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Urea ABC transporter, permease component 1
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urtB
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Urea ABC transporter, permease component 2
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urtD
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Urea ABC transporter, ATP-binding component 1
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urtE
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Urea ABC transporter, ATP-binding component 1
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Position: -146
Score: 4 Sequence: AGCATGTTATTTGTGCA
Locus tag: SKA53_05805
Name: glnB Funciton: Nitrogen regulatory protein P-II
Locus tag: SKA53_05810
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnB
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Nitrogen regulatory protein P-II
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -115
Score: 4.9 Sequence: TGCCTGAATTTTAGGCA
Locus tag: SKA53_14866
Name: ureD Funciton: Urease accessory protein, UreD
Locus tag: SKA53_14871
Name: ureA Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: SKA53_14876
Name: ureB Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: SKA53_14881
Name: ureC Funciton: Urease, alpha subunit (EC 3.5.1.5)
Locus tag: SKA53_14886
Name: TM1040_0383 Funciton: Conserved hypothetical protein
Locus tag: SKA53_14891
Name: ureE Funciton: Urease accessory protein, UreE
Locus tag: SKA53_14896
Name: ureF Funciton: Urease accessory protein, UreF
Locus tag: SKA53_14901
Name: ureG Funciton: Urease accessory protein, UreG |
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ureD
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Urease accessory protein, UreD
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ureA
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Urease, gamma subunit (EC 3.5.1.5)
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ureB
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Urease, beta subunit (EC 3.5.1.5)
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ureC
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Urease, alpha subunit (EC 3.5.1.5)
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TM1040_0383
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Conserved hypothetical protein
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ureE
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Urease accessory protein, UreE
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ureF
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Urease accessory protein, UreF
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ureG
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Urease accessory protein, UreG
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Position: -109
Score: 5 Sequence: TGACTAATTTTTAGGCA
Locus tag: SKA53_04878
Name: nifR3 Funciton: Predicted oxidoreductase, FAD binding
Locus tag: SKA53_04873
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: SKA53_04868
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: SKA53_04863
Name: ntrY Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: SKA53_04858
Name: ntrX Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
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nifR3
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Predicted oxidoreductase, FAD binding
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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ntrY
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Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
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ntrX
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Nitrogen assimilation transcriptional regulator NtrX, Fis family
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Position: -173
Score: 4.7 Sequence: TGCCTATTAATCAGGCA
Position: -144
Score: 4.7 Sequence: TGTACAATAATTGTGCA
Locus tag: SKA53_13946
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: SKA53_13951
Name: amtB Funciton: Ammonium transporter |
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glnK
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Nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |