Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Loktanella vestfoldensis SKA53

Properties
Regulator type: Transcription factor
TF locus tag: SKA53_04868
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Rhodobacterales
Statistics of regulated genes:
- Genes 22
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 92 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -280
Score: 4.6
Sequence: AGCATAAAAATTGTGCA
Locus tag: SKA53_09869
Name: urtA
Funciton: Urea ABC transporter, substrate-binding component
Locus tag: SKA53_09864
Name: urtB
Funciton: Urea ABC transporter, permease component 1
Locus tag: SKA53_09859
Name: urtB
Funciton: Urea ABC transporter, permease component 2
Locus tag: SKA53_09854
Name: urtD
Funciton: Urea ABC transporter, ATP-binding component 1
Locus tag: SKA53_09849
Name: urtE
Funciton: Urea ABC transporter, ATP-binding component 1
SKA53_09869
urtA
Urea ABC transporter, substrate-binding component
SKA53_09864
urtB
Urea ABC transporter, permease component 1
SKA53_09859
urtB
Urea ABC transporter, permease component 2
SKA53_09854
urtD
Urea ABC transporter, ATP-binding component 1
SKA53_09849
urtE
Urea ABC transporter, ATP-binding component 1
Position: -146
Score: 4
Sequence: AGCATGTTATTTGTGCA
Locus tag: SKA53_05805
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: SKA53_05810
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
SKA53_05805
glnB
Nitrogen regulatory protein P-II
SKA53_05810
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -115
Score: 4.9
Sequence: TGCCTGAATTTTAGGCA
Locus tag: SKA53_14866
Name: ureD
Funciton: Urease accessory protein, UreD
Locus tag: SKA53_14871
Name: ureA
Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: SKA53_14876
Name: ureB
Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: SKA53_14881
Name: ureC
Funciton: Urease, alpha subunit (EC 3.5.1.5)
Locus tag: SKA53_14886
Name: TM1040_0383
Funciton: Conserved hypothetical protein
Locus tag: SKA53_14891
Name: ureE
Funciton: Urease accessory protein, UreE
Locus tag: SKA53_14896
Name: ureF
Funciton: Urease accessory protein, UreF
Locus tag: SKA53_14901
Name: ureG
Funciton: Urease accessory protein, UreG
SKA53_14866
ureD
Urease accessory protein, UreD
SKA53_14871
ureA
Urease, gamma subunit (EC 3.5.1.5)
SKA53_14876
ureB
Urease, beta subunit (EC 3.5.1.5)
SKA53_14881
ureC
Urease, alpha subunit (EC 3.5.1.5)
SKA53_14886
TM1040_0383
Conserved hypothetical protein
SKA53_14891
ureE
Urease accessory protein, UreE
SKA53_14896
ureF
Urease accessory protein, UreF
SKA53_14901
ureG
Urease accessory protein, UreG
Position: -109
Score: 5
Sequence: TGACTAATTTTTAGGCA
Locus tag: SKA53_04878
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: SKA53_04873
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: SKA53_04868
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: SKA53_04863
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: SKA53_04858
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
SKA53_04878
nifR3
Predicted oxidoreductase, FAD binding
SKA53_04873
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
SKA53_04868
ntrC
Nitrogen regulation protein NR(I), Fis family
SKA53_04863
ntrY
Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
SKA53_04858
ntrX
Nitrogen assimilation transcriptional regulator NtrX, Fis family
Position: -173
Score: 4.7
Sequence: TGCCTATTAATCAGGCA
Position: -144
Score: 4.7
Sequence: TGTACAATAATTGTGCA
Locus tag: SKA53_13946
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: SKA53_13951
Name: amtB
Funciton: Ammonium transporter
SKA53_13946
glnK
Nitrogen regulatory protein P-II
SKA53_13951
amtB
Ammonium transporter
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