Regulon of NtrC in Roseovarius nubinhibens ISM

Properties
Regulator type:	Transcription factor
TF locus tag:	ISM_16635
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Rhodobacterales
Statistics of regulated genes:
- Genes	9
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 92 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -161 Score: 4.7 Sequence: TGCCCAAATTTCGGGCG Position: -141 Score: 5 Sequence: TGCCTAAATAATGTGCA Locus tag: ISM_05410 Name: glnB Funciton: Nitrogen regulatory protein P-II Locus tag: ISM_05405 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	ISM_05410	glnB	Nitrogen regulatory protein P-II
	ISM_05405	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -108 Score: 5.1 Sequence: TGCTTAAATTTTGTGCA Position: -18 Score: 4.7 Sequence: TGCACAAGGATTAAGCA Locus tag: ISM_16645 Name: nifR3 Funciton: Predicted oxidoreductase, FAD binding Locus tag: ISM_16640 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: ISM_16635 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family Locus tag: ISM_16630 Name: ntrY Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) Locus tag: ISM_16625 Name: ntrX Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
	ISM_16645	nifR3	Predicted oxidoreductase, FAD binding
	ISM_16640	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	ISM_16635	ntrC	Nitrogen regulation protein NR(I), Fis family
	ISM_16630	ntrY	Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
	ISM_16625	ntrX	Nitrogen assimilation transcriptional regulator NtrX, Fis family
Position: -175 Score: 4.1 Sequence: CGCCCAATTTCTAGTCA Position: -146 Score: 4.4 Sequence: TGCACAAAAAATAGTCG Locus tag: ISM_08965 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: ISM_08960 Name: amtB Funciton: Ammonium transporter
	ISM_08965	glnK	Nitrogen regulatory protein P-II
	ISM_08960	amtB	Ammonium transporter

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD