Regulon of NtrC in Paracoccus denitrificans PD1222

Properties
Regulator type:	Transcription factor
TF locus tag:	Pden_4129
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Rhodobacterales
Statistics of regulated genes:
- Genes	10
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 92 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -148 Score: 4.4 Sequence: CGCACATAATTCAGGCA Position: -128 Score: 4.9 Sequence: TGCATAATATTCGGGCA Locus tag: Pden_4461 Name: glnB Funciton: Nitrogen regulatory protein P-II Locus tag: Pden_4462 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	Pden_4461	glnB	Nitrogen regulatory protein P-II
	Pden_4462	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -130 Score: 4 Sequence: TGCCCTTATTTCGGGCA Locus tag: Pden_2032 Name: amtB2 Funciton: Ammonium transporter
	Pden_2032	amtB2	Ammonium transporter
Position: -121 Score: 4.3 Sequence: TGCCGACTATTTAGGCA Locus tag: Pden_4131 Name: nifR3 Funciton: Predicted oxidoreductase, FAD binding Locus tag: Pden_4130 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: Pden_4129 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family Locus tag: Pden_4128 Name: ntrY Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) Locus tag: Pden_4127 Name: ntrX Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
	Pden_4131	nifR3	Predicted oxidoreductase, FAD binding
	Pden_4130	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	Pden_4129	ntrC	Nitrogen regulation protein NR(I), Fis family
	Pden_4128	ntrY	Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
	Pden_4127	ntrX	Nitrogen assimilation transcriptional regulator NtrX, Fis family
Position: -140 Score: 4 Sequence: CGCCCGAACCATGGGCA Locus tag: Pden_4455 Name: nasT Funciton: Nitrogen assimilation attenuator protein NasT Locus tag: Pden_4454 Name: nrtA2 Funciton: Nitrate ABC transporter, substrate-binding component
	Pden_4455	nasT	Nitrogen assimilation attenuator protein NasT
	Pden_4454	nrtA2	Nitrate ABC transporter, substrate-binding component

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD