Regulon of NtrC in Rhodobacterales bacterium HTCC2654

Properties
Regulator type:	Transcription factor
TF locus tag:	RB2654_03219
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Rhodobacterales
Statistics of regulated genes:
- Genes	25
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 92 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -260 Score: 4.7 Sequence: CGCACAAGAATTAAGCA Locus tag: RB2654_12489 Name: nrtA Funciton: Nitrate ABC transporter, substrate-binding component Locus tag: RB2654_12484 Name: nrtB Funciton: Nitrate ABC transporter, permease component Locus tag: RB2654_12479 Name: nrtC Funciton: Nitrate ABC transporter, ATP-binding component Locus tag: RB2654_12474 Name: hmp Funciton: Nitric oxide dioxygenase Locus tag: RB2654_12469 Name: nasD Funciton: Nitrite reductase, large subunit (EC 1.7.1.4) Locus tag: RB2654_12464 Name: nasE Funciton: Nitrite reductase, small subunit (EC 1.7.1.4) Locus tag: RB2654_12459 Name: nasA Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
	RB2654_12489	nrtA	Nitrate ABC transporter, substrate-binding component
	RB2654_12484	nrtB	Nitrate ABC transporter, permease component
	RB2654_12479	nrtC	Nitrate ABC transporter, ATP-binding component
	RB2654_12474	hmp	Nitric oxide dioxygenase
	RB2654_12469	nasD	Nitrite reductase, large subunit (EC 1.7.1.4)
	RB2654_12464	nasE	Nitrite reductase, small subunit (EC 1.7.1.4)
	RB2654_12459	nasA	Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
Position: -248 Score: 4.5 Sequence: CGCACAATTATTAGGCT Position: -178 Score: 4 Sequence: TGCTCAAAAGGTATGCA Locus tag: RB2654_15836 Name: urtA Funciton: Urea ABC transporter, substrate-binding component Locus tag: RB2654_15841 Name: urtA Funciton: Urea ABC transporter, substrate-binding component Locus tag: RB2654_15846 Name: urtA Funciton: Urea ABC transporter, substrate-binding component Locus tag: RB2654_15851 Name: urtB Funciton: Urea ABC transporter, permease component 1 Locus tag: RB2654_15856 Name: urtB Funciton: Urea ABC transporter, permease component 2 Locus tag: RB2654_15861 Name: urtD Funciton: Urea ABC transporter, ATP-binding component 1 Locus tag: RB2654_15866 Name: urtE Funciton: Urea ABC transporter, ATP-binding component 1
	RB2654_15836	urtA	Urea ABC transporter, substrate-binding component
	RB2654_15841	urtA	Urea ABC transporter, substrate-binding component
	RB2654_15846	urtA	Urea ABC transporter, substrate-binding component
	RB2654_15851	urtB	Urea ABC transporter, permease component 1
	RB2654_15856	urtB	Urea ABC transporter, permease component 2
	RB2654_15861	urtD	Urea ABC transporter, ATP-binding component 1
	RB2654_15866	urtE	Urea ABC transporter, ATP-binding component 1
Position: -127 Score: 5 Sequence: TGCATAAATATTGTGCG Locus tag: RB2654_02324 Name: glnB Funciton: Nitrogen regulatory protein P-II Locus tag: RB2654_02319 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	RB2654_02324	glnB	Nitrogen regulatory protein P-II
	RB2654_02319	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -107 Score: 4.6 Sequence: TGCACAAATAACAGGCA Position: -17 Score: 4.5 Sequence: CGCACAAGGATTAAGCA Locus tag: RB2654_03209 Name: nifR3 Funciton: Predicted oxidoreductase, FAD binding Locus tag: RB2654_03214 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: RB2654_03219 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family Locus tag: RB2654_03224 Name: ntrY Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) Locus tag: RB2654_03229 Name: ntrX Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
	RB2654_03209	nifR3	Predicted oxidoreductase, FAD binding
	RB2654_03214	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	RB2654_03219	ntrC	Nitrogen regulation protein NR(I), Fis family
	RB2654_03224	ntrY	Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
	RB2654_03229	ntrX	Nitrogen assimilation transcriptional regulator NtrX, Fis family
Position: -136 Score: 4.9 Sequence: TGACTAAAATTTGTGCA Position: -117 Score: 3.9 Sequence: TGCCCACAATGCGGGCA Locus tag: RB2654_10683 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: RB2654_10688 Name: amtB Funciton: Ammonium transporter
	RB2654_10683	glnK	Nitrogen regulatory protein P-II
	RB2654_10688	amtB	Ammonium transporter
Position: -91 Score: 4.7 Sequence: TGCCTAGAAATTAGGCA Locus tag: RB2654_12499 Name: nasT Funciton: Nitrogen assimilation attenuator protein NasT Locus tag: RB2654_12494 Name: nrtA2 Funciton: Nitrate ABC transporter, substrate-binding component
	RB2654_12499	nasT	Nitrogen assimilation attenuator protein NasT
	RB2654_12494	nrtA2	Nitrate ABC transporter, substrate-binding component

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtrC in Rhodobacterales bacterium HTCC2654

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --