Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Jannaschia sp. CCS1

Properties
Regulator type: Transcription factor
TF locus tag: Jann_2238
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Rhodobacterales
Statistics of regulated genes:
- Genes 33
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 92 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -138
Score: 4.7
Sequence: CGCCCAAAAAATAGGCG
Locus tag: Jann_3041
Name: nrtB
Funciton: Nitrate ABC transporter, permease component
Locus tag: Jann_3042
Name: nrtC
Funciton: Nitrate ABC transporter, ATP-binding component
Locus tag: Jann_3043
Name: nasD
Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: Jann_3044
Name: nasE
Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: Jann_3045
Name: nasA
Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
Locus tag: Jann_3046
Name: COG0547
Funciton: Glycosyl transferase, family 3
Locus tag: Jann_3047
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Jann_3041
nrtB
Nitrate ABC transporter, permease component
Jann_3042
nrtC
Nitrate ABC transporter, ATP-binding component
Jann_3043
nasD
Nitrite reductase, large subunit (EC 1.7.1.4)
Jann_3044
nasE
Nitrite reductase, small subunit (EC 1.7.1.4)
Jann_3045
nasA
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
Jann_3046
COG0547
Glycosyl transferase, family 3
Jann_3047
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -269
Score: 4.7
Sequence: TGCCCAAAATTCGGGCG
Locus tag: Jann_3040
Name: nrtA
Funciton: Nitrate ABC transporter, substrate-binding component
Jann_3040
nrtA
Nitrate ABC transporter, substrate-binding component
Position: -141
Score: 4.4
Sequence: TGCCTGATATTTGCGCA
Locus tag: Jann_3440
Name: gdhA
Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Jann_3440
gdhA
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Position: -183
Score: 4.4
Sequence: CGCACAAAAAACAGGCA
Locus tag: Jann_4056
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: Jann_4057
Name: amtB
Funciton: Ammonium transporter
Jann_4056
glnK
Nitrogen regulatory protein P-II
Jann_4057
amtB
Ammonium transporter
Position: -122
Score: 4.3
Sequence: CGCCCGAATAATAGGCG
Locus tag: Jann_2232
Name: amtB2
Funciton: Ammonium transporter
Jann_2232
amtB2
Ammonium transporter
Position: -150
Score: 4.4
Sequence: TGATCATTTTTTAGGCG
Locus tag: Jann_1516
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: Jann_1515
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
Jann_1516
glnB
Nitrogen regulatory protein P-II
Jann_1515
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -139
Score: 4.2
Sequence: TGCCTGCGAATTAGGCA
Locus tag: Jann_1744
Name: ureD
Funciton: Urease accessory protein, UreD
Locus tag: Jann_1745
Name: ureA
Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: Jann_1747
Name: ureB
Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: Jann_1748
Name: null
Funciton: protein of unknown function DUF1311
Locus tag: Jann_1749
Name: null
Funciton: Twin-arginine translocation pathway signal
Locus tag: Jann_1750
Name: PF02627
Funciton: Putative alkylhydroperoxidase
Locus tag: Jann_1751
Name: Jann_1751
Funciton: Hypothetical protein
Locus tag: Jann_1752
Name: ureC
Funciton: Urease, alpha subunit (EC 3.5.1.5)
Locus tag: Jann_1753
Name: Jann_1753
Funciton: Conserved hypothetical protein
Locus tag: Jann_1754
Name: ureE
Funciton: Urease accessory protein, UreE
Locus tag: Jann_1755
Name: ureF
Funciton: Urease accessory protein, UreF
Locus tag: Jann_1756
Name: ureG
Funciton: Urease accessory protein, UreG
Jann_1744
ureD
Urease accessory protein, UreD
Jann_1745
ureA
Urease, gamma subunit (EC 3.5.1.5)
Jann_1747
ureB
Urease, beta subunit (EC 3.5.1.5)
Jann_1748
protein of unknown function DUF1311
Jann_1749
Twin-arginine translocation pathway signal
Jann_1750
PF02627
Putative alkylhydroperoxidase
Jann_1751
Jann_1751
Hypothetical protein
Jann_1752
ureC
Urease, alpha subunit (EC 3.5.1.5)
Jann_1753
Jann_1753
Conserved hypothetical protein
Jann_1754
ureE
Urease accessory protein, UreE
Jann_1755
ureF
Urease accessory protein, UreF
Jann_1756
ureG
Urease accessory protein, UreG
Position: -54
Score: 5.1
Sequence: TGCTTAATTATTGTGCA
Locus tag: Jann_2236
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: Jann_2237
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: Jann_2238
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: Jann_2239
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: Jann_2240
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
Jann_2236
nifR3
Predicted oxidoreductase, FAD binding
Jann_2237
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Jann_2238
ntrC
Nitrogen regulation protein NR(I), Fis family
Jann_2239
ntrY
Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Jann_2240
ntrX
Nitrogen assimilation transcriptional regulator NtrX, Fis family
Position: -56
Score: 4.6
Sequence: TGCACAATACTTAATCA
Locus tag: Jann_3038
Name: nasT
Funciton: Nitrogen assimilation attenuator protein NasT
Locus tag: Jann_3039
Name: nrtA2
Funciton: Nitrate ABC transporter, substrate-binding component
Jann_3038
nasT
Nitrogen assimilation attenuator protein NasT
Jann_3039
nrtA2
Nitrate ABC transporter, substrate-binding component
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