Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Roseobacter sp. MED193

Properties
Regulator type: Transcription factor
TF locus tag: MED193_04611
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Rhodobacterales
Statistics of regulated genes:
- Genes 32
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 92 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -130
Score: 4.2
Sequence: CGCCTATTCTTTAATCA
Locus tag: MED193_04641
Name: amtB2
Funciton: Ammonium transporter
MED193_04641
amtB2
Ammonium transporter
Position: -232
Score: 4.5
Sequence: TGCCCAAAAACTAGGCG
Locus tag: MED193_14842
Name: nrtA
Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: MED193_14837
Name: nrtB
Funciton: Nitrate ABC transporter, permease component
Locus tag: MED193_14832
Name: nrtC
Funciton: Nitrate ABC transporter, ATP-binding component
Locus tag: MED193_14827
Name: nasD
Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: MED193_14822
Name: nasE
Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: MED193_14817
Name: nasA
Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
Locus tag: MED193_14812
Name: COG0547
Funciton: Glycosyl transferase, family 3
Locus tag: MED193_14807
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
MED193_14842
nrtA
Nitrate ABC transporter, substrate-binding component
MED193_14837
nrtB
Nitrate ABC transporter, permease component
MED193_14832
nrtC
Nitrate ABC transporter, ATP-binding component
MED193_14827
nasD
Nitrite reductase, large subunit (EC 1.7.1.4)
MED193_14822
nasE
Nitrite reductase, small subunit (EC 1.7.1.4)
MED193_14817
nasA
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
MED193_14812
COG0547
Glycosyl transferase, family 3
MED193_14807
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -201
Score: 4.2
Sequence: TGCGTAACTTTTGGGCA
Locus tag: MED193_07963
Name: urtA
Funciton: Urea ABC transporter, substrate-binding component
Locus tag: MED193_07958
Name: urtB
Funciton: Urea ABC transporter, permease component 1
Locus tag: MED193_07953
Name: urtB
Funciton: Urea ABC transporter, permease component 2
Locus tag: MED193_07948
Name: urtD
Funciton: Urea ABC transporter, ATP-binding component 1
Locus tag: MED193_07943
Name: urtE
Funciton: Urea ABC transporter, ATP-binding component 1
MED193_07963
urtA
Urea ABC transporter, substrate-binding component
MED193_07958
urtB
Urea ABC transporter, permease component 1
MED193_07953
urtB
Urea ABC transporter, permease component 2
MED193_07948
urtD
Urea ABC transporter, ATP-binding component 1
MED193_07943
urtE
Urea ABC transporter, ATP-binding component 1
Position: -145
Score: 4.2
Sequence: CGCCTATTTTTAATGCA
Position: -125
Score: 4.4
Sequence: TGCCTACTTATTAATCA
Locus tag: MED193_05036
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: MED193_05041
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
MED193_05036
glnB
Nitrogen regulatory protein P-II
MED193_05041
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -165
Score: 5.2
Sequence: TGCTTAAAATTTAGGCA
Position: -72
Score: 4.7
Sequence: CGCACAAGGATTAGGCA
Locus tag: MED193_04621
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: MED193_04616
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: MED193_04611
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: MED193_04606
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: MED193_04601
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
MED193_04621
nifR3
Predicted oxidoreductase, FAD binding
MED193_04616
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
MED193_04611
ntrC
Nitrogen regulation protein NR(I), Fis family
MED193_04606
ntrY
Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
MED193_04601
ntrX
Nitrogen assimilation transcriptional regulator NtrX, Fis family
Position: -83
Score: 4.2
Sequence: TGCCCAAAAGTTACGCA
Locus tag: MED193_07968
Name: ureD
Funciton: Urease accessory protein, UreD
Locus tag: MED193_07973
Name: ureA
Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: MED193_07983
Name: ureB
Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: MED193_07988
Name: ureC
Funciton: Urease, alpha subunit (EC 3.5.1.5)
Locus tag: MED193_07993
Name: ureE
Funciton: Urease accessory protein, UreE
Locus tag: MED193_07998
Name: ureF
Funciton: Urease accessory protein, UreF
Locus tag: MED193_08003
Name: ureG
Funciton: Urease accessory protein, UreG
MED193_07968
ureD
Urease accessory protein, UreD
MED193_07973
ureA
Urease, gamma subunit (EC 3.5.1.5)
MED193_07983
ureB
Urease, beta subunit (EC 3.5.1.5)
MED193_07988
ureC
Urease, alpha subunit (EC 3.5.1.5)
MED193_07993
ureE
Urease accessory protein, UreE
MED193_07998
ureF
Urease accessory protein, UreF
MED193_08003
ureG
Urease accessory protein, UreG
Position: -91
Score: 4.6
Sequence: AGCCTAAAAATTGAGCA
Locus tag: MED193_14852
Name: nasT
Funciton: Nitrogen assimilation attenuator protein NasT
Locus tag: MED193_14847
Name: nrtA2
Funciton: Nitrate ABC transporter, substrate-binding component
MED193_14852
nasT
Nitrogen assimilation attenuator protein NasT
MED193_14847
nrtA2
Nitrate ABC transporter, substrate-binding component
Position: -188
Score: 4.3
Sequence: CGCCTAATTTCTGGGCG
Locus tag: MED193_15832
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: MED193_15827
Name: amtB
Funciton: Ammonium transporter
MED193_15832
glnK
Nitrogen regulatory protein P-II
MED193_15827
amtB
Ammonium transporter
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