Regulon of NtrC in Roseobacter sp. MED193
| Regulator type: | Transcription factor |
| TF locus tag: | MED193_04611 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 32 |
| - Operons | 8 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -130
Score: 4.2 Sequence: CGCCTATTCTTTAATCA
Locus tag: MED193_04641
Name: amtB2 Funciton: Ammonium transporter |
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amtB2
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Ammonium transporter
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Position: -232
Score: 4.5 Sequence: TGCCCAAAAACTAGGCG
Locus tag: MED193_14842
Name: nrtA Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: MED193_14837
Name: nrtB Funciton: Nitrate ABC transporter, permease component
Locus tag: MED193_14832
Name: nrtC Funciton: Nitrate ABC transporter, ATP-binding component
Locus tag: MED193_14827
Name: nasD Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: MED193_14822
Name: nasE Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: MED193_14817
Name: nasA Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
Locus tag: MED193_14812
Name: COG0547 Funciton: Glycosyl transferase, family 3
Locus tag: MED193_14807
Name: cysG Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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nrtA
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Nitrate ABC transporter, substrate-binding component
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nrtB
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Nitrate ABC transporter, permease component
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nrtC
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Nitrate ABC transporter, ATP-binding component
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nasD
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Nitrite reductase, large subunit (EC 1.7.1.4)
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nasE
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Nitrite reductase, small subunit (EC 1.7.1.4)
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nasA
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Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
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COG0547
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Glycosyl transferase, family 3
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cysG
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
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Position: -201
Score: 4.2 Sequence: TGCGTAACTTTTGGGCA
Locus tag: MED193_07963
Name: urtA Funciton: Urea ABC transporter, substrate-binding component
Locus tag: MED193_07958
Name: urtB Funciton: Urea ABC transporter, permease component 1
Locus tag: MED193_07953
Name: urtB Funciton: Urea ABC transporter, permease component 2
Locus tag: MED193_07948
Name: urtD Funciton: Urea ABC transporter, ATP-binding component 1
Locus tag: MED193_07943
Name: urtE Funciton: Urea ABC transporter, ATP-binding component 1 |
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urtA
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Urea ABC transporter, substrate-binding component
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urtB
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Urea ABC transporter, permease component 1
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urtB
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Urea ABC transporter, permease component 2
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urtD
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Urea ABC transporter, ATP-binding component 1
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urtE
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Urea ABC transporter, ATP-binding component 1
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Position: -145
Score: 4.2 Sequence: CGCCTATTTTTAATGCA
Position: -125
Score: 4.4 Sequence: TGCCTACTTATTAATCA
Locus tag: MED193_05036
Name: glnB Funciton: Nitrogen regulatory protein P-II
Locus tag: MED193_05041
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnB
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Nitrogen regulatory protein P-II
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -165
Score: 5.2 Sequence: TGCTTAAAATTTAGGCA
Position: -72
Score: 4.7 Sequence: CGCACAAGGATTAGGCA
Locus tag: MED193_04621
Name: nifR3 Funciton: Predicted oxidoreductase, FAD binding
Locus tag: MED193_04616
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: MED193_04611
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: MED193_04606
Name: ntrY Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: MED193_04601
Name: ntrX Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
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nifR3
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Predicted oxidoreductase, FAD binding
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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ntrY
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Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
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ntrX
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Nitrogen assimilation transcriptional regulator NtrX, Fis family
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Position: -83
Score: 4.2 Sequence: TGCCCAAAAGTTACGCA
Locus tag: MED193_07968
Name: ureD Funciton: Urease accessory protein, UreD
Locus tag: MED193_07973
Name: ureA Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: MED193_07983
Name: ureB Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: MED193_07988
Name: ureC Funciton: Urease, alpha subunit (EC 3.5.1.5)
Locus tag: MED193_07993
Name: ureE Funciton: Urease accessory protein, UreE
Locus tag: MED193_07998
Name: ureF Funciton: Urease accessory protein, UreF
Locus tag: MED193_08003
Name: ureG Funciton: Urease accessory protein, UreG |
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ureD
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Urease accessory protein, UreD
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ureA
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Urease, gamma subunit (EC 3.5.1.5)
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ureB
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Urease, beta subunit (EC 3.5.1.5)
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ureC
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Urease, alpha subunit (EC 3.5.1.5)
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ureE
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Urease accessory protein, UreE
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ureF
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Urease accessory protein, UreF
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ureG
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Urease accessory protein, UreG
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Position: -91
Score: 4.6 Sequence: AGCCTAAAAATTGAGCA
Locus tag: MED193_14852
Name: nasT Funciton: Nitrogen assimilation attenuator protein NasT
Locus tag: MED193_14847
Name: nrtA2 Funciton: Nitrate ABC transporter, substrate-binding component |
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nasT
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Nitrogen assimilation attenuator protein NasT
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nrtA2
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Nitrate ABC transporter, substrate-binding component
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Position: -188
Score: 4.3 Sequence: CGCCTAATTTCTGGGCG
Locus tag: MED193_15832
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: MED193_15827
Name: amtB Funciton: Ammonium transporter |
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glnK
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Nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |