Regulon of NtrC in Silicibacter pomeroyi DSS-3
| Regulator type: | Transcription factor |
| TF locus tag: | SPO2087 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -133
Score: 3.9 Sequence: TGTGCAAAAAATGTGCA
Locus tag: SPO3724
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: SPO3723
Name: amtB Funciton: Ammonium transporter |
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glnK
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Nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Position: -144
Score: 4.8 Sequence: TGCACAATCCTTGTGCA
Position: -105
Score: 3.9 Sequence: CGCCCAAAATTGCTGCA
Locus tag: SPO2294
Name: glnB Funciton: Nitrogen regulatory protein P-II
Locus tag: SPO2295
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnB
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Nitrogen regulatory protein P-II
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -112
Score: 4.7 Sequence: CGATTAAAAATTAGGCA
Position: -20
Score: 4.8 Sequence: TGCACAAGGATTAGGCA
Locus tag: SPO2089
Name: nifR3 Funciton: Predicted oxidoreductase, FAD binding
Locus tag: SPO2088
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: SPO2087
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: SPO2086
Name: ntrY Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: SPO2085
Name: ntrX Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
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nifR3
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Predicted oxidoreductase, FAD binding
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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ntrY
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Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
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ntrX
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Nitrogen assimilation transcriptional regulator NtrX, Fis family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |