Regulon of NtrC in Silicibacter pomeroyi DSS-3

Properties
Regulator type:	Transcription factor
TF locus tag:	SPO2087
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Rhodobacterales
Statistics of regulated genes:
- Genes	9
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 92 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -133 Score: 3.9 Sequence: TGTGCAAAAAATGTGCA Locus tag: SPO3724 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: SPO3723 Name: amtB Funciton: Ammonium transporter
	SPO3724	glnK	Nitrogen regulatory protein P-II
	SPO3723	amtB	Ammonium transporter
Position: -144 Score: 4.8 Sequence: TGCACAATCCTTGTGCA Position: -105 Score: 3.9 Sequence: CGCCCAAAATTGCTGCA Locus tag: SPO2294 Name: glnB Funciton: Nitrogen regulatory protein P-II Locus tag: SPO2295 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	SPO2294	glnB	Nitrogen regulatory protein P-II
	SPO2295	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -112 Score: 4.7 Sequence: CGATTAAAAATTAGGCA Position: -20 Score: 4.8 Sequence: TGCACAAGGATTAGGCA Locus tag: SPO2089 Name: nifR3 Funciton: Predicted oxidoreductase, FAD binding Locus tag: SPO2088 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: SPO2087 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family Locus tag: SPO2086 Name: ntrY Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) Locus tag: SPO2085 Name: ntrX Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
	SPO2089	nifR3	Predicted oxidoreductase, FAD binding
	SPO2088	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	SPO2087	ntrC	Nitrogen regulation protein NR(I), Fis family
	SPO2086	ntrY	Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
	SPO2085	ntrX	Nitrogen assimilation transcriptional regulator NtrX, Fis family

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD