Regulon of NtrC in Oceanicola batsensis HTCC2597

Properties
Regulator type:	Transcription factor
TF locus tag:	OB2597_03107
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Rhodobacterales
Statistics of regulated genes:
- Genes	21
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 92 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -108 Score: 4.6 Sequence: TGTTCAAAATTTAGGCA Position: -16 Score: 4.8 Sequence: TGCACAAGGTTTAGGCA Locus tag: OB2597_03097 Name: nifR3 Funciton: Predicted oxidoreductase, FAD binding Locus tag: OB2597_03102 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: OB2597_03107 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family Locus tag: OB2597_03112 Name: ntrY Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) Locus tag: OB2597_03117 Name: ntrX Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
	OB2597_03097	nifR3	Predicted oxidoreductase, FAD binding
	OB2597_03102	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	OB2597_03107	ntrC	Nitrogen regulation protein NR(I), Fis family
	OB2597_03112	ntrY	Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
	OB2597_03117	ntrX	Nitrogen assimilation transcriptional regulator NtrX, Fis family
Position: -321 Score: 3.9 Sequence: TGCCTGTTTCTTGGGCT Position: -280 Score: 4.2 Sequence: TGCCCAAAAACTGATCA Locus tag: OB2597_15036 Name: urtA Funciton: Urea ABC transporter, substrate-binding component Locus tag: OB2597_15041 Name: urtB Funciton: Urea ABC transporter, permease component 1 Locus tag: OB2597_15046 Name: urtB Funciton: Urea ABC transporter, permease component 2 Locus tag: OB2597_15051 Name: urtD Funciton: Urea ABC transporter, ATP-binding component 1 Locus tag: OB2597_15056 Name: urtE Funciton: Urea ABC transporter, ATP-binding component 1
	OB2597_15036	urtA	Urea ABC transporter, substrate-binding component
	OB2597_15041	urtB	Urea ABC transporter, permease component 1
	OB2597_15046	urtB	Urea ABC transporter, permease component 2
	OB2597_15051	urtD	Urea ABC transporter, ATP-binding component 1
	OB2597_15056	urtE	Urea ABC transporter, ATP-binding component 1
Position: -204 Score: 4.4 Sequence: CGCCCGTATTTTGGGCA Locus tag: OB2597_07075 Name: ureD Funciton: Urease accessory protein, UreD Locus tag: OB2597_07070 Name: ureA Funciton: Urease, gamma subunit (EC 3.5.1.5) Locus tag: OB2597_07060 Name: ureB Funciton: Urease, beta subunit (EC 3.5.1.5) Locus tag: OB2597_07055 Name: OB2597_07055 Funciton: Hypothetical protein Locus tag: OB2597_07050 Name: ureC Funciton: Urease, alpha subunit (EC 3.5.1.5) Locus tag: OB2597_07045 Name: OB2597_07045 Funciton: Conserved hypothetical protein Locus tag: OB2597_07040 Name: ureE Funciton: Urease accessory protein, UreE Locus tag: OB2597_07035 Name: ureF Funciton: Urease accessory protein, UreF Locus tag: OB2597_07030 Name: ureG Funciton: Urease accessory protein, UreG
	OB2597_07075	ureD	Urease accessory protein, UreD
	OB2597_07070	ureA	Urease, gamma subunit (EC 3.5.1.5)
	OB2597_07060	ureB	Urease, beta subunit (EC 3.5.1.5)
	OB2597_07055	OB2597_07055	Hypothetical protein
	OB2597_07050	ureC	Urease, alpha subunit (EC 3.5.1.5)
	OB2597_07045	OB2597_07045	Conserved hypothetical protein
	OB2597_07040	ureE	Urease accessory protein, UreE
	OB2597_07035	ureF	Urease accessory protein, UreF
	OB2597_07030	ureG	Urease accessory protein, UreG
Position: -165 Score: 4.4 Sequence: CGCACAAAAATTAATCG Position: -136 Score: 5.2 Sequence: TGCCCAATAATTGTGCA Locus tag: OB2597_10701 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: OB2597_10696 Name: amtB Funciton: Ammonium transporter
	OB2597_10701	glnK	Nitrogen regulatory protein P-II
	OB2597_10696	amtB	Ammonium transporter

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtrC in Oceanicola batsensis HTCC2597

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --