Regulon of NtrC in Roseovarius sp. 217
| Regulator type: | Transcription factor |
| TF locus tag: | ROS217_20457 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 18 |
| - Operons | 5 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -120
Score: 3.9 Sequence: TGCGCTAAAAATAGGCA
Locus tag: ROS217_05379
Name: ureD Funciton: Urease accessory protein, UreD
Locus tag: ROS217_05374
Name: ureA Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: ROS217_05364
Name: ureB Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: ROS217_05359
Name: ureC Funciton: Urease, alpha subunit (EC 3.5.1.5)
Locus tag: ROS217_05354
Name: ureE Funciton: Urease accessory protein, UreE
Locus tag: ROS217_05349
Name: ureF Funciton: Urease accessory protein, UreF
Locus tag: ROS217_05344
Name: ureG Funciton: Urease accessory protein, UreG |
|||
|
ureD
|
Urease accessory protein, UreD
|
||
|
ureA
|
Urease, gamma subunit (EC 3.5.1.5)
|
||
|
ureB
|
Urease, beta subunit (EC 3.5.1.5)
|
||
|
ureC
|
Urease, alpha subunit (EC 3.5.1.5)
|
||
|
ureE
|
Urease accessory protein, UreE
|
||
|
ureF
|
Urease accessory protein, UreF
|
||
|
ureG
|
Urease accessory protein, UreG
|
||
|
Position: -128
Score: 4.8 Sequence: CGCCCATTATTTAGGCA
Locus tag: ROS217_18110
Name: glnB Funciton: Nitrogen regulatory protein P-II
Locus tag: ROS217_18105
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
|||
|
glnB
|
Nitrogen regulatory protein P-II
|
||
|
glnA
|
Glutamine synthetase type I (EC 6.3.1.2)
|
||
|
Position: -113
Score: 5 Sequence: CGCCTAAAAATTAGGCG
Position: -21
Score: 4.8 Sequence: TGCACAAGGATTAGGCA
Locus tag: ROS217_20467
Name: nifR3 Funciton: Predicted oxidoreductase, FAD binding
Locus tag: ROS217_20462
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: ROS217_20457
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: ROS217_20452
Name: ntrY Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: ROS217_20447
Name: ntrX Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
|||
|
nifR3
|
Predicted oxidoreductase, FAD binding
|
||
|
ntrB
|
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
|
||
|
ntrC
|
Nitrogen regulation protein NR(I), Fis family
|
||
|
ntrY
|
Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
|
||
|
ntrX
|
Nitrogen assimilation transcriptional regulator NtrX, Fis family
|
||
|
Position: -162
Score: 4.7 Sequence: TGCATAAATTTTAGGCT
Position: -133
Score: 4.8 Sequence: TGCACATATTTTGAGCA
Locus tag: ROS217_04115
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: ROS217_04110
Name: amtB Funciton: Ammonium transporter |
|||
|
glnK
|
Nitrogen regulatory protein P-II
|
||
|
amtB
|
Ammonium transporter
|
||
|
Position: -111
Score: 4.5 Sequence: CGCCCATTTTATGGGCA
Locus tag: ROS217_14776
Name: nasT Funciton: Nitrogen assimilation attenuator protein NasT
Locus tag: ROS217_14781
Name: nrtA2 Funciton: Nitrate ABC transporter, substrate-binding component |
|||
|
nasT
|
Nitrogen assimilation attenuator protein NasT
|
||
|
nrtA2
|
Nitrate ABC transporter, substrate-binding component
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |