Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CceR (GapR) in Silicibacter TM1040

Properties
Regulator type: Transcription factor
TF locus tag: TM1040_3128
Regulator family: LacI
Regulation mode:
Biological process: Central carbohydrate metabolism
Effector: 6-phosphogluconate
Regulog: CceR (GapR) - Rhodobacterales
Statistics of regulated genes:
- Genes 14
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 177 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -129
Score: 5.3
Sequence: CGCTGTTTACGCTAACATGC
Locus tag: TM1040_2379
Name: tal
Funciton: Transaldolase (EC 2.2.1.2)
TM1040_2379
tal
Transaldolase (EC 2.2.1.2)
Position: -102
Score: 4.5
Sequence: GCAAGTGAGCGCAATCATGC
Locus tag: TM1040_2028
Name: pycA
Funciton: Pyruvate carboxyl transferase (EC 6.4.1.1)
TM1040_2028
pycA
Pyruvate carboxyl transferase (EC 6.4.1.1)
Position: -114
Score: 4.9
Sequence: AAATGTTTGCGTTAACGGTC
Locus tag: TM1040_2516
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
TM1040_2516
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -85
Score: 4.7
Sequence: CTTCGTTAGCGATAACGATA
Position: -60
Score: 4.5
Sequence: GAGTGATAGCGGTACCAGTG
Locus tag: TM1040_0417
Name: gapB
Funciton: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
TM1040_0417
gapB
Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -150
Score: 4.8
Sequence: AACAGTTACCGCAAACGCCG
Position: -126
Score: 4.3
Sequence: AGGTGTTAACGCCACCATCA
Position: -107
Score: 4.5
Sequence: AAGGTTTTGCGCTAACAGTC
Locus tag: TM1040_1111
Name: gapA
Funciton: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
TM1040_1111
gapA
Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -198
Score: 4
Sequence: TTTTGGTGGCGCTAAAGGTT
Position: -177
Score: 5.1
Sequence: GCTTGGTTGCGCTAACGACC
Locus tag: TM1040_2442
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
TM1040_2442
pckA
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
Position: -93
Score: 4.7
Sequence: AAATGTTAGCGCTTTCAGGT
Locus tag: TM1040_3042
Name: scrK
Funciton: Fructokinase (EC 2.7.1.4)
TM1040_3042
scrK
Fructokinase (EC 2.7.1.4)
Position: -130
Score: 3.8
Sequence: GCAAGTTTGCGAAAATTTGG
Position: -98
Score: 5.5
Sequence: CATTGTTAGCGCTAACTTGG
Locus tag: TM1040_0378
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Locus tag: TM1040_0377
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: TM1040_0376
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: TM1040_0375
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
TM1040_0378
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
TM1040_0377
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
TM1040_0376
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
TM1040_0375
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -214
Score: 4.1
Sequence: AAGGGTGAGCGCTATCATCT
Position: -89
Score: 5.1
Sequence: AGCCGTTAGCGGTAACGCTT
Locus tag: TM1040_0931
Name: eno
Funciton: Enolase (EC 4.2.1.11)
TM1040_0931
eno
Enolase (EC 4.2.1.11)
Position: -105
Score: 5
Sequence: GGGCGTTAGCGCAACCATTG
Locus tag: TM1040_1976
Name: fba
Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
TM1040_1976
fba
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
Position: -167
Score: 4.5
Sequence: GACTGTTAGCGCAAAACCTT
Position: -148
Score: 4.3
Sequence: TGATGGTGGCGTTAACACCT
Position: -124
Score: 4.8
Sequence: CGGCGTTTGCGGTAACTGTT
Locus tag: TM1040_1112
Name: yedI
Funciton: conserved inner membrane protein
TM1040_1112
yedI
conserved inner membrane protein
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