Regulon of CceR (GapR) in Silicibacter TM1040
| Regulator type: | Transcription factor |
| TF locus tag: | TM1040_3128 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 6-phosphogluconate |
| Regulog: | CceR (GapR) - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 14 |
| - Operons | 11 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - LacI
- By effector - 6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -129
Score: 5.3 Sequence: CGCTGTTTACGCTAACATGC
Locus tag: TM1040_2379
Name: tal Funciton: Transaldolase (EC 2.2.1.2) |
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tal
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Transaldolase (EC 2.2.1.2)
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Position: -102
Score: 4.5 Sequence: GCAAGTGAGCGCAATCATGC
Locus tag: TM1040_2028
Name: pycA Funciton: Pyruvate carboxyl transferase (EC 6.4.1.1) |
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pycA
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Pyruvate carboxyl transferase (EC 6.4.1.1)
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Position: -114
Score: 4.9 Sequence: AAATGTTTGCGTTAACGGTC
Locus tag: TM1040_2516
Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40) |
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pykA
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Pyruvate kinase (EC 2.7.1.40)
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Position: -85
Score: 4.7 Sequence: CTTCGTTAGCGATAACGATA
Position: -60
Score: 4.5 Sequence: GAGTGATAGCGGTACCAGTG
Locus tag: TM1040_0417
Name: gapB Funciton: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
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gapB
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Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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Position: -150
Score: 4.8 Sequence: AACAGTTACCGCAAACGCCG
Position: -126
Score: 4.3 Sequence: AGGTGTTAACGCCACCATCA
Position: -107
Score: 4.5 Sequence: AAGGTTTTGCGCTAACAGTC
Locus tag: TM1040_1111
Name: gapA Funciton: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
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gapA
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Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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Position: -198
Score: 4 Sequence: TTTTGGTGGCGCTAAAGGTT
Position: -177
Score: 5.1 Sequence: GCTTGGTTGCGCTAACGACC
Locus tag: TM1040_2442
Name: pckA Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
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pckA
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Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
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Position: -93
Score: 4.7 Sequence: AAATGTTAGCGCTTTCAGGT
Locus tag: TM1040_3042
Name: scrK Funciton: Fructokinase (EC 2.7.1.4) |
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scrK
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Fructokinase (EC 2.7.1.4)
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Position: -130
Score: 3.8 Sequence: GCAAGTTTGCGAAAATTTGG
Position: -98
Score: 5.5 Sequence: CATTGTTAGCGCTAACTTGG
Locus tag: TM1040_0378
Name: pgi Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Locus tag: TM1040_0377
Name: zwf Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: TM1040_0376
Name: edd Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: TM1040_0375
Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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pgi
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Glucose-6-phosphate isomerase (EC 5.3.1.9)
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zwf
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Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
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edd
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Phosphogluconate dehydratase (EC 4.2.1.12)
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eda
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2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
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Position: -214
Score: 4.1 Sequence: AAGGGTGAGCGCTATCATCT
Position: -89
Score: 5.1 Sequence: AGCCGTTAGCGGTAACGCTT
Locus tag: TM1040_0931
Name: eno Funciton: Enolase (EC 4.2.1.11) |
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eno
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Enolase (EC 4.2.1.11)
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Position: -105
Score: 5 Sequence: GGGCGTTAGCGCAACCATTG
Locus tag: TM1040_1976
Name: fba Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
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fba
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Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
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Position: -167
Score: 4.5 Sequence: GACTGTTAGCGCAAAACCTT
Position: -148
Score: 4.3 Sequence: TGATGGTGGCGTTAACACCT
Position: -124
Score: 4.8 Sequence: CGGCGTTTGCGGTAACTGTT
Locus tag: TM1040_1112
Name: yedI Funciton: conserved inner membrane protein |
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yedI
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conserved inner membrane protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |