Regulog CceR (GapR) - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 6-phosphogluconate |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - LacI
- By effector - 6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Hyphomonas neptunium ATCC 15444 | ||
| Jannaschia sp. CCS1 | 14 | 12 |
| Loktanella vestfoldensis SKA53 | 11 | 9 |
| Oceanicaulis alexandrii HTCC2633 | ||
| Oceanicola batsensis HTCC2597 | 13 | 10 |
| Oceanicola granulosus HTCC2516 | 5 | 5 |
| Paracoccus denitrificans PD1222 | 17 | 10 |
| Rhodobacter sphaeroides 2.4.1 | 19 | 8 |
| Rhodobacterales bacterium HTCC2654 | 16 | 12 |
| Roseobacter sp. MED193 | 13 | 11 |
| Roseovarius nubinhibens ISM | 13 | 8 |
| Roseovarius sp. 217 | 13 | 8 |
| Silicibacter TM1040 | 14 | 11 |
| Silicibacter pomeroyi DSS-3 | 18 | 13 |
| Sulfitobacter sp. EE-36 | 11 | 8 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| pgi |
Gene: HNE_1733: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Jann_1971: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: SKA53_03196: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: OA2633_07424: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: OB2597_02952: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: OG2516_02658: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Pden_1950: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: RSP_2736: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: RB2654_01825: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
*
Roseobacter sp. MED193 Site: position = -77 score = 4.98119 sequence = TACCGTTATCGCTAACAGTA Gene: MED193_17414: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: ISM_16490: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: ROS217_18437: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
*
Silicibacter TM1040 Site: position = -98 score = 5.52393 sequence = CATTGTTAGCGCTAACTTGG Site: position = -130 score = 3.80473 sequence = GCAAGTTTGCGAAAATTTGG Gene: TM1040_0378: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: SPO2046: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: EE36_15782: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Glucose-6-phosphate isomerase (EC 5.3.1.9) |
| zwf |
|
*
Jannaschia sp. CCS1 Site: position = -37 score = 5.77205 sequence = CGCTGTTAGCGCTAACGTGA Gene: Jann_1969: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Loktanella vestfoldensis SKA53 Site: position = -42 score = 5.3109 sequence = GGGCGTTAGCGCTAACGAAA Gene: SKA53_03186: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
|
*
Oceanicola batsensis HTCC2597 Site: position = -47 score = 4.16478 sequence = CTATGTTAGCGCCCAAACTC Gene: OB2597_02942: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
Gene: OG2516_02668: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Paracoccus denitrificans PD1222 Site: position = -65 score = 4.11005 sequence = GCCTGAAACCGCTATCATCC Gene: Pden_1952: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -38 score = 5.98931 sequence = GGCCGTTAGCGCTAACAGGC Gene: RSP_2734: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Rhodobacterales bacterium HTCC2654 Site: position = -60 score = 4.94993 sequence = TTGGGTTAGCGCTAACAATC Gene: RB2654_01815: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
2
Roseobacter sp. MED193 Gene: MED193_17419: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Gene: MED193_04416: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
Gene: ISM_16500: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
Gene: ROS217_18447: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
Gene: TM1040_0377: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*2
Silicibacter pomeroyi DSS-3 Site: position = -53 score = 5.58283 sequence = AAATGTTTGCGCTAACAGTG Gene: SPO2048: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Site: position = -65 score = 5.49325 sequence = ACATGTTAGCGGTAACATTG Gene: SPO3033: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Sulfitobacter sp. EE-36 Site: position = -66 score = 5.61079 sequence = GTATGTTTGCGCTAACATCA Gene: EE36_15792: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
| edd |
Gene: HNE_1740: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Jannaschia sp. CCS1 Site: position = -55 score = 5.83603 sequence = ACATGTTAGCGCTAACATGA Gene: Jann_1953: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Loktanella vestfoldensis SKA53 Site: position = -58 score = 5.57412 sequence = CCTTGTTAGCGCTAACACAA Gene: SKA53_05488: Phosphogluconate dehydratase (EC 4.2.1.12) |
|
*
Oceanicola batsensis HTCC2597 Site: position = -54 score = 5.241 sequence = CATTGTTACCGCTAACAAAG Gene: OB2597_02267: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Oceanicola granulosus HTCC2516 Site: position = -62 score = 5.48613 sequence = GGTTGTTAGCGGTAACGGCC Gene: OG2516_00150: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Paracoccus denitrificans PD1222 Site: position = -48 score = 5.42184 sequence = CAATGTTACCGCTAACAGGA Gene: Pden_1955: Phosphogluconate dehydratase (EC 4.2.1.12) |
|
*
Rhodobacterales bacterium HTCC2654 Site: position = -65 score = 5.22499 sequence = GGTTGTTAGCGCTATCACGA Gene: RB2654_03494: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: MED193_17424: Phosphogluconate dehydratase (EC 4.2.1.12) |
|
|
Gene: TM1040_0376: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: SPO3032: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Sulfitobacter sp. EE-36 Site: position = -74 score = 5.56099 sequence = ATAAGTTAGCGCTAACATAC Gene: EE36_09240: Phosphogluconate dehydratase (EC 4.2.1.12) |
Phosphogluconate dehydratase (EC 4.2.1.12) |
| eda |
Gene: HNE_1187: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Jann_1954: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
|
|
Gene: OB2597_02272: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
|
*
Paracoccus denitrificans PD1222 Site: position = -85 score = 4.96558 sequence = CTCAGTTAACGCTAACACAC Gene: Pden_1245: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -2160 score = 5.48681 sequence = GCTAGTTAGCGCTAACAAAC Gene: RSP_2645: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: RB2654_03489: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
|
|
|
Gene: TM1040_0375: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: SPO3031: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: EE36_09245: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
| pgl |
|
Gene: Jann_1970: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: SKA53_03191: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
|
Gene: OB2597_02947: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: OG2516_02663: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Pden_1951: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: RSP_2735: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: RB2654_01820: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: MED193_04411: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: ISM_16495: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: ROS217_18442: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: TM1040_1330: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: SPO2047: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: EE36_15787: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
| CRON 2. | ||||||||||||||||
| atpH |
Gene: HNE_1895: ATP synthase delta chain (EC 3.6.3.14) |
Gene: Jann_1046: ATP synthase delta chain (EC 3.6.3.14) |
Gene: SKA53_12823: ATP synthase delta chain (EC 3.6.3.14) |
Gene: OA2633_09029: ATP synthase delta chain (EC 3.6.3.14) |
Gene: OB2597_09184: ATP synthase delta chain (EC 3.6.3.14) |
Gene: OG2516_08978: ATP synthase delta chain (EC 3.6.3.14) |
*
Paracoccus denitrificans PD1222 Site: position = -153 score = 4.7196 sequence = AGGTGTTTGCGCAATCGGTT Gene: Pden_3815: ATP synthase delta chain (EC 3.6.3.14) |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -288 score = 4.76178 sequence = CGATGTTAGCGGCACCATCG Gene: RSP_2296: ATP synthase delta chain (EC 3.6.3.14) |
Gene: RB2654_19863: ATP synthase delta chain (EC 3.6.3.14) |
Gene: MED193_20094: ATP synthase delta chain (EC 3.6.3.14) |
*
Roseovarius nubinhibens ISM Site: position = -302 score = 4.55165 sequence = TTACGATAGCGGTAACGCCG Gene: ISM_11730: ATP synthase delta chain (EC 3.6.3.14) |
*
Roseovarius sp. 217 Site: position = -214 score = 4.59352 sequence = CCATGATAGCGTTAACGCTT Gene: ROS217_14311: ATP synthase delta chain (EC 3.6.3.14) |
Gene: TM1040_2089: ATP synthase delta chain (EC 3.6.3.14) |
Gene: SPO3165: ATP synthase delta chain (EC 3.6.3.14) |
Gene: EE36_03978: ATP synthase delta chain (EC 3.6.3.14) |
ATP synthase delta chain (EC 3.6.3.14) |
| atpA |
Gene: HNE_1894: ATP synthase alpha chain (EC 3.6.3.14) |
Gene: Jann_1047: ATP synthase alpha chain (EC 3.6.3.14) |
Gene: SKA53_12828: ATP synthase alpha chain (EC 3.6.3.14) |
Gene: OA2633_09024: ATP synthase alpha chain (EC 3.6.3.14) |
Gene: OB2597_09179: ATP synthase alpha chain (EC 3.6.3.14) |
Gene: OG2516_08973: ATP synthase alpha chain (EC 3.6.3.14) |
Gene: Pden_3816: ATP synthase alpha chain (EC 3.6.3.14) |
Gene: RSP_2297: ATP synthase alpha chain (EC 3.6.3.14) |
Gene: RB2654_19868: ATP synthase alpha chain (EC 3.6.3.14) |
Gene: MED193_20099: ATP synthase alpha chain (EC 3.6.3.14) |
Gene: ISM_11735: ATP synthase alpha chain (EC 3.6.3.14) |
Gene: ROS217_14316: ATP synthase alpha chain (EC 3.6.3.14) |
Gene: TM1040_2088: ATP synthase alpha chain (EC 3.6.3.14) |
Gene: SPO3164: ATP synthase alpha chain (EC 3.6.3.14) |
Gene: EE36_03973: ATP synthase alpha chain (EC 3.6.3.14) |
ATP synthase alpha chain (EC 3.6.3.14) |
| atpG |
Gene: HNE_1893: ATP synthase gamma chain (EC 3.6.3.14) |
Gene: Jann_1048: ATP synthase gamma chain (EC 3.6.3.14) |
Gene: SKA53_12833: ATP synthase gamma chain (EC 3.6.3.14) |
Gene: OA2633_09019: ATP synthase gamma chain (EC 3.6.3.14) |
Gene: OB2597_09174: ATP synthase gamma chain (EC 3.6.3.14) |
Gene: OG2516_08968: ATP synthase gamma chain (EC 3.6.3.14) |
Gene: Pden_3817: ATP synthase gamma chain (EC 3.6.3.14) |
Gene: RSP_2298: ATP synthase gamma chain (EC 3.6.3.14) |
Gene: RB2654_19873: ATP synthase gamma chain (EC 3.6.3.14) |
Gene: MED193_20104: ATP synthase gamma chain (EC 3.6.3.14) |
Gene: ISM_11740: ATP synthase gamma chain (EC 3.6.3.14) |
Gene: ROS217_14321: ATP synthase gamma chain (EC 3.6.3.14) |
Gene: TM1040_2087: ATP synthase gamma chain (EC 3.6.3.14) |
Gene: SPO3163: ATP synthase gamma chain (EC 3.6.3.14) |
Gene: EE36_03968: ATP synthase gamma chain (EC 3.6.3.14) |
ATP synthase gamma chain (EC 3.6.3.14) |
| atpD |
Gene: HNE_1892: ATP synthase beta chain (EC 3.6.3.14) |
Gene: Jann_1049: ATP synthase beta chain (EC 3.6.3.14) |
Gene: SKA53_12838: ATP synthase beta chain (EC 3.6.3.14) |
Gene: OA2633_09014: ATP synthase beta chain (EC 3.6.3.14) |
Gene: OB2597_09169: ATP synthase beta chain (EC 3.6.3.14) |
Gene: OG2516_08963: ATP synthase beta chain (EC 3.6.3.14) |
Gene: Pden_3818: ATP synthase beta chain (EC 3.6.3.14) |
Gene: RSP_2299: ATP synthase beta chain (EC 3.6.3.14) |
Gene: RB2654_19878: ATP synthase beta chain (EC 3.6.3.14) |
Gene: MED193_20109: ATP synthase beta chain (EC 3.6.3.14) |
Gene: ISM_11745: ATP synthase beta chain (EC 3.6.3.14) |
Gene: ROS217_14326: ATP synthase beta chain (EC 3.6.3.14) |
Gene: TM1040_2086: ATP synthase beta chain (EC 3.6.3.14) |
Gene: SPO3162: ATP synthase beta chain (EC 3.6.3.14) |
Gene: EE36_03963: ATP synthase beta chain (EC 3.6.3.14) |
ATP synthase beta chain (EC 3.6.3.14) |
| atpC |
Gene: HNE_1891: ATP synthase epsilon chain (EC 3.6.3.14) |
Gene: Jann_1050: ATP synthase epsilon chain (EC 3.6.3.14) |
Gene: SKA53_12843: ATP synthase epsilon chain (EC 3.6.3.14) |
Gene: OA2633_09009: ATP synthase epsilon chain (EC 3.6.3.14) |
Gene: OB2597_09159: ATP synthase epsilon chain (EC 3.6.3.14) |
Gene: OG2516_08958: ATP synthase epsilon chain (EC 3.6.3.14) |
Gene: Pden_3819: ATP synthase epsilon chain (EC 3.6.3.14) |
Gene: RSP_2300: ATP synthase epsilon chain (EC 3.6.3.14) |
Gene: RB2654_19883: ATP synthase epsilon chain (EC 3.6.3.14) |
Gene: MED193_20114: ATP synthase epsilon chain (EC 3.6.3.14) |
Gene: ISM_11750: ATP synthase epsilon chain (EC 3.6.3.14) |
Gene: ROS217_14331: ATP synthase epsilon chain (EC 3.6.3.14) |
Gene: TM1040_2085: ATP synthase epsilon chain (EC 3.6.3.14) |
Gene: SPO3161: ATP synthase epsilon chain (EC 3.6.3.14) |
Gene: EE36_03958: ATP synthase epsilon chain (EC 3.6.3.14) |
ATP synthase epsilon chain (EC 3.6.3.14) |
| atpI |
|
Gene: Jann_1051: ATP synthase protein I |
|
|
Gene: OB2597_09154: ATP synthase protein I |
Gene: OG2516_08953: ATP synthase protein I |
Gene: Pden_3820: ATP synthase protein I |
|
Gene: RB2654_19908: ATP synthase protein I |
Gene: MED193_20119: ATP synthase protein I |
Gene: ISM_11755: ATP synthase protein I |
Gene: ROS217_14336: ATP synthase protein I |
Gene: TM1040_2084: ATP synthase protein I |
Gene: SPO3160: ATP synthase protein I |
Gene: EE36_03953: ATP synthase protein I |
ATP synthase protein I |
| CRON 3. | ||||||||||||||||
| sdhC |
Gene: HNE_3243: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: Jann_0811: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: SKA53_14576: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: OA2633_09259: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: OB2597_09559: Succinate dehydrogenase cytochrome b-556 subunit |
|
Gene: Pden_0567: Succinate dehydrogenase cytochrome b-556 subunit |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -189 score = 5.09658 sequence = GCATGATTGCGCAAACATGT Gene: RSP_0974: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: RB2654_17261: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: MED193_10498: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: ISM_05000: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: ROS217_08404: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: TM1040_3525: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: SPO0358: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: EE36_09400: Succinate dehydrogenase cytochrome b-556 subunit |
Succinate dehydrogenase cytochrome b-556 subunit |
| sdhD |
Gene: HNE_3244: succinate dehydrogenase, cytochrome b subunit |
Gene: Jann_0810: succinate dehydrogenase, cytochrome b subunit |
Gene: SKA53_14581: succinate dehydrogenase, cytochrome b subunit |
Gene: OA2633_09264: succinate dehydrogenase, cytochrome b subunit |
Gene: OB2597_09554: succinate dehydrogenase, cytochrome b subunit |
Gene: OG2516_08072: succinate dehydrogenase, cytochrome b subunit |
Gene: Pden_0568: succinate dehydrogenase, cytochrome b subunit |
Gene: RSP_0975: succinate dehydrogenase, cytochrome b subunit |
Gene: RB2654_17256: succinate dehydrogenase, cytochrome b subunit |
Gene: MED193_10493: succinate dehydrogenase, cytochrome b subunit |
Gene: ISM_04995: succinate dehydrogenase, cytochrome b subunit |
Gene: ROS217_08399: succinate dehydrogenase, cytochrome b subunit |
Gene: TM1040_3526: succinate dehydrogenase, cytochrome b subunit |
Gene: SPO0359: succinate dehydrogenase, cytochrome b subunit |
Gene: EE36_09405: succinate dehydrogenase, cytochrome b subunit |
succinate dehydrogenase, cytochrome b subunit |
| sdhA |
Gene: HNE_3245: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: Jann_0809: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: SKA53_14586: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: OA2633_09269: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: OB2597_09549: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: OG2516_08067: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: Pden_0569: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: RSP_0976: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: RB2654_17251: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: MED193_10488: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: ISM_04990: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: ROS217_08394: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: TM1040_3527: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: SPO0360: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: EE36_09410: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
| RSP_0977 |
|
Gene: Jann_0807: hypothetical protein |
|
|
|
|
Gene: Pden_0570: hypothetical protein |
Gene: RSP_0977: hypothetical protein |
|
|
Gene: ISM_04980: hypothetical protein |
Gene: ROS217_08389: hypothetical protein |
|
|
Gene: EE36_09415: hypothetical protein |
hypothetical protein |
| RSP_0978 |
|
|
Gene: SKA53_14591: hypothetical protein |
|
|
Gene: OG2516_08062: hypothetical protein |
Gene: Pden_0571: hypothetical protein |
Gene: RSP_0978: hypothetical protein |
|
|
|
|
|
|
|
hypothetical protein |
| sdhB |
Gene: HNE_3247: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: Jann_0804: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: SKA53_14601: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: OA2633_09274: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: OB2597_09539: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: OG2516_08052: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: Pden_0572: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: RSP_0979: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: RB2654_17246: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: MED193_10473: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: ISM_04975: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: ROS217_08384: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: TM1040_3530: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: SPO0361: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: EE36_09425: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
| CRON 4. | ||||||||||||||||
| pykA |
|
*
Jannaschia sp. CCS1 Site: position = -80 score = 5.29633 sequence = GACTGATAGCGCAAACATCG Gene: Jann_0447: Pyruvate kinase (EC 2.7.1.40) |
*
Loktanella vestfoldensis SKA53 Site: position = -39 score = 5.44726 sequence = TGCTGTTACCGCTAACGGGC Gene: SKA53_10229: Pyruvate kinase (EC 2.7.1.40) |
|
*
Oceanicola batsensis HTCC2597 Site: position = -52 score = 4.04145 sequence = GATTGATAGCGTTCACATGA Gene: OB2597_10686: Pyruvate kinase (EC 2.7.1.40) |
*
Oceanicola granulosus HTCC2516 Site: position = -74 score = 4.29591 sequence = TTGCGTTAGCGTTATCGACC Gene: OG2516_09243: Pyruvate kinase (EC 2.7.1.40) |
*
Paracoccus denitrificans PD1222 Site: position = -32 score = 5.21762 sequence = CGACGATAGCGCAAACATGC Gene: Pden_2276: Pyruvate kinase (EC 2.7.1.40) |
Gene: RSP_1766: Pyruvate kinase (EC 2.7.1.40) |
*
Rhodobacterales bacterium HTCC2654 Site: position = -28 score = 5.34143 sequence = GACTGTTACCGCAAACAGAC Gene: RB2654_16676: Pyruvate kinase (EC 2.7.1.40) |
*
Roseobacter sp. MED193 Site: position = -78 score = 5.18184 sequence = TGCTGTTTGCGGTAACATTT Gene: MED193_12017: Pyruvate kinase (EC 2.7.1.40) |
*
Roseovarius nubinhibens ISM Site: position = -82 score = 5.06749 sequence = TGATGTTAGCGATAACGGTA Gene: ISM_02615: Pyruvate kinase (EC 2.7.1.40) |
*
Roseovarius sp. 217 Site: position = -51 score = 5.37337 sequence = CGATGTTAGCGTTAACATTG Gene: ROS217_12046: Pyruvate kinase (EC 2.7.1.40) |
*
Silicibacter TM1040 Site: position = -114 score = 4.90282 sequence = AAATGTTTGCGTTAACGGTC Gene: TM1040_2516: Pyruvate kinase (EC 2.7.1.40) |
*
Silicibacter pomeroyi DSS-3 Site: position = -43 score = 5.23123 sequence = GGATGTTTGCGGTAACATAA Gene: SPO3600: Pyruvate kinase (EC 2.7.1.40) |
*
Sulfitobacter sp. EE-36 Site: position = -128 score = 4.97747 sequence = AAGTGTTAACGCTAACACAT Site: position = -112 score = 5.03145 sequence = ACATGTTAACGCTAACTTAT Gene: EE36_08598: Pyruvate kinase (EC 2.7.1.40) |
Pyruvate kinase (EC 2.7.1.40) |
| CRON 5. | ||||||||||||||||
| gapB |
|
*
Jannaschia sp. CCS1 Site: position = -63 score = 5.35933 sequence = CCCTGTTACCGCTAACACAC Gene: Jann_1695: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Loktanella vestfoldensis SKA53 Site: position = -40 score = 5.59433 sequence = CAATGTTAGCGCCAACATTC Gene: SKA53_02871: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
|
*
Oceanicola batsensis HTCC2597 Site: position = -49 score = 5.21079 sequence = CTATGTTAGCGTTAACGGAC Gene: OB2597_01282: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
|
*
Paracoccus denitrificans PD1222 Site: position = -124 score = 3.95415 sequence = CAATTGCACCGCTAACATCG Gene: Pden_4465: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
|
*
Rhodobacterales bacterium HTCC2654 Site: position = -91 score = 5.40784 sequence = TGATGTTAGCGGTAACGGCG Gene: RB2654_02419: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Roseobacter sp. MED193 Site: position = -110 score = 3.96176 sequence = CTCCGTTATCGATACCGATA Site: position = -88 score = 4.93994 sequence = TAATGTTAGCGATAACGAAT Gene: MED193_10071: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
|
*
Roseovarius sp. 217 Site: position = -35 score = 5.65288 sequence = AATTGTTAGCGCTAACATAT Gene: ROS217_23127: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Silicibacter TM1040 Site: position = -85 score = 4.72164 sequence = CTTCGTTAGCGATAACGATA Site: position = -60 score = 4.45989 sequence = GAGTGATAGCGGTACCAGTG Gene: TM1040_0417: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Silicibacter pomeroyi DSS-3 Site: position = -59 score = 5.46883 sequence = TTTTGTTAGCGCTAACAAAT Gene: SPO0701: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Sulfitobacter sp. EE-36 Site: position = -35 score = 5.34563 sequence = CGATGTTAGCGCTATCAAAT Gene: EE36_13578: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
| CRON 6. | ||||||||||||||||
| pckA |
Gene: HNE_2705: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Jannaschia sp. CCS1 Site: position = -138 score = 4.94501 sequence = GTATGGTTGCGCTAACTGTG Gene: Jann_0535: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Loktanella vestfoldensis SKA53 Site: position = -125 score = 5.15492 sequence = ATTTGGTTGCGCTAACATGC Site: position = -105 score = 4.84322 sequence = ATTTGGTTGCGCTAACGTTT Gene: SKA53_13138: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
|
*
Oceanicola batsensis HTCC2597 Site: position = -168 score = 4.4791 sequence = GGGTGATTGCGCTAAAGTTT Site: position = -148 score = 4.73849 sequence = ACTTGGTGGCGCTAACTGCG Gene: OB2597_10169: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Oceanicola granulosus HTCC2516 Site: position = -124 score = 4.73706 sequence = CGCGGGTTGCGCTAACATCA Site: position = -103 score = 5.01824 sequence = CCTTGGTTGCGCTAACTGCG Gene: OG2516_08708: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Paracoccus denitrificans PD1222 Site: position = -132 score = 4.59972 sequence = AAATGATTGCGCTAACCGTC Site: position = -113 score = 4.52695 sequence = CTCTGATTGCGCTAACCCTG Gene: Pden_2852: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -188 score = 3.93578 sequence = CGGAGGTTGCGCCAACCTGT Site: position = -168 score = 5.2328 sequence = CGCTGGTTGCGCTAACGTCT Gene: RSP_1680: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Rhodobacterales bacterium HTCC2654 Site: position = -230 score = 4.96415 sequence = TGGTGGTTGCGCAAACAGCC Site: position = -209 score = 4.622 sequence = CATTGCTTGCGCTAACGCGA Gene: RB2654_15911: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Roseobacter sp. MED193 Site: position = -183 score = 4.26264 sequence = CAATGGTTGCGCTAAACTCC Site: position = -162 score = 4.77481 sequence = CCTTGGTGGCGCTAACTGCG Site: position = -95 score = 3.71284 sequence = AACCGGTGGCGATACCGGCA Gene: MED193_16479: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Roseovarius nubinhibens ISM Site: position = -174 score = 5.28988 sequence = CGCTGGTTGCGCTAACGTCC Site: position = -154 score = 4.63433 sequence = AATTGGTTGCGCTAACTCAG Gene: ISM_13535: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*2
Roseovarius sp. 217 Site: position = -197 score = 4.79233 sequence = GCGCGTTGTCGCTAACATAC Site: position = -177 score = 5.07073 sequence = GTCTGGTTGCGCTAACTTGC Site: position = -157 score = 4.89727 sequence = GCTTGGTTGCGCTAACTGCA Gene: ROS217_04095: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) Site: position = -77 score = 4.79502 sequence = AAGTGATTGCGCTAACTTGG Gene: ROS217_15745: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Silicibacter TM1040 Site: position = -198 score = 4.04578 sequence = TTTTGGTGGCGCTAAAGGTT Site: position = -177 score = 5.05137 sequence = GCTTGGTTGCGCTAACGACC Gene: TM1040_2442: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Silicibacter pomeroyi DSS-3 Site: position = -172 score = 3.96983 sequence = TCTTGGTTGCGCTAAACTAT Site: position = -151 score = 5.01824 sequence = CCTTGGTTGCGCTAACTGCG Gene: SPO0709: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Sulfitobacter sp. EE-36 Site: position = -158 score = 4.75877 sequence = GACAGTTTCCGCAAACAGTT Site: position = -138 score = 4.84344 sequence = ACATGGTGGCGCTAACTGCG Gene: EE36_04888: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
| CRON 7. | ||||||||||||||||
| gapA |
|
*
Jannaschia sp. CCS1 Site: position = -128 score = 4.91749 sequence = CCGTGTTAGCGCCACCACCC Site: position = -109 score = 4.61602 sequence = CGATGTTTGCGCCACCGTTT Site: position = -97 score = 5.21564 sequence = CACCGTTTCCGCTAACATGC Gene: Jann_1698: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Loktanella vestfoldensis SKA53 Site: position = -135 score = 5.10712 sequence = GAATGTTGGCGCAAACATTT Site: position = -122 score = 4.67204 sequence = AACATTTAGCGGTAACAGCA Site: position = -93 score = 4.98102 sequence = GTCTGTTACCGTTAACACCC Gene: SKA53_02881: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
Gene: OA2633_08164: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Oceanicola batsensis HTCC2597 Site: position = -141 score = 4.86757 sequence = GCCTGTTAGCGCCAACCCTC Site: position = -119 score = 4.91545 sequence = ACGGGTTAGCGCCAACAGGC Site: position = -100 score = 4.3611 sequence = CCGGTTTATCGCTAACATAC Gene: OB2597_01292: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
|
|
|
*
Rhodobacterales bacterium HTCC2654 Site: position = -176 score = 4.72272 sequence = CCGCGTTTGCGTTAACGGTT Site: position = -164 score = 4.34998 sequence = TAACGGTTCCGCTAACGCCC Site: position = -134 score = 5.12834 sequence = ATATGTTTTCGCTAACACGC Gene: RB2654_02429: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Roseobacter sp. MED193 Site: position = -132 score = 4.51909 sequence = AAGCGTTAGCGCCACCGTGT Site: position = -99 score = 3.93982 sequence = TCCCGTTAACGCCACCGGTA Site: position = -77 score = 4.10276 sequence = AACCGTTAACGCCACCGGTC Site: position = -58 score = 4.63593 sequence = CTAGTTTTGCGCTAACATAC Gene: MED193_03557: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Roseovarius nubinhibens ISM Site: position = -105 score = 4.60421 sequence = GAAATTTATCGCTAACAAGG Gene: ISM_10930: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Roseovarius sp. 217 Site: position = -150 score = 4.74721 sequence = TTGCGTTAGCGCAATCACCG Site: position = -109 score = 4.88045 sequence = CTAGGTTAACGCTAACATCC Gene: ROS217_23117: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Silicibacter TM1040 Site: position = -150 score = 4.77904 sequence = AACAGTTACCGCAAACGCCG Site: position = -126 score = 4.29756 sequence = AGGTGTTAACGCCACCATCA Site: position = -107 score = 4.46636 sequence = AAGGTTTTGCGCTAACAGTC Gene: TM1040_1111: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Silicibacter pomeroyi DSS-3 Site: position = -123 score = 4.83285 sequence = AAGCGTTAGCGCAACCGGGG Site: position = -104 score = 5.39997 sequence = GCAAGTTTGCGCTAACACCT Gene: SPO2198: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Sulfitobacter sp. EE-36 Site: position = -129 score = 4.56103 sequence = GAGGGTTATCGCTAACACGA Site: position = -110 score = 4.48925 sequence = AATATTTATCGCTAACATAC Gene: EE36_13588: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
| CRON 8. | ||||||||||||||||
| cceR2 |
|
|
|
|
|
|
|
|
|
*
Roseobacter sp. MED193 Site: position = -119 score = 4.93994 sequence = ATTCGTTATCGCTAACATTA Gene: MED193_10066: Transcriptional regulator, LacI family |
|
|
|
|
|
Transcriptional regulator, LacI family |
| CRON 9. | ||||||||||||||||
| pycA |
|
Gene: Jann_2781: Pyruvate carboxyl transferase (EC 6.4.1.1) |
Gene: SKA53_07351: Pyruvate carboxyl transferase (EC 6.4.1.1) |
|
Gene: OB2597_16100: Pyruvate carboxyl transferase (EC 6.4.1.1) |
Gene: OG2516_00115: Pyruvate carboxyl transferase (EC 6.4.1.1) |
Gene: Pden_4144: Pyruvate carboxyl transferase (EC 6.4.1.1) |
Gene: RSP_2090: Pyruvate carboxyl transferase (EC 6.4.1.1) |
Gene: RB2654_06137: Pyruvate carboxyl transferase (EC 6.4.1.1) |
*
Roseobacter sp. MED193 Site: position = -104 score = 4.17709 sequence = GAATGAGAGCGCAATCATGC Gene: MED193_07548: Pyruvate carboxyl transferase (EC 6.4.1.1) |
Gene: ISM_16910: Pyruvate carboxyl transferase (EC 6.4.1.1) |
Gene: ROS217_21927: Pyruvate carboxyl transferase (EC 6.4.1.1) |
*
Silicibacter TM1040 Site: position = -102 score = 4.46569 sequence = GCAAGTGAGCGCAATCATGC Gene: TM1040_2028: Pyruvate carboxyl transferase (EC 6.4.1.1) |
*
Silicibacter pomeroyi DSS-3 Site: position = -104 score = 4.42921 sequence = GGATGCGAGCGATAACATGC Gene: SPO1171: Pyruvate carboxyl transferase (EC 6.4.1.1) |
Gene: EE36_17042: Pyruvate carboxyl transferase (EC 6.4.1.1) |
Pyruvate carboxyl transferase (EC 6.4.1.1) |
| CRON 10. | ||||||||||||||||
| mdh |
Gene: HNE_3218: Malate dehydrogenase (EC 1.1.1.37) |
*
Jannaschia sp. CCS1 Site: position = -101 score = 4.08899 sequence = GGGCGTTGGGGCTATCGGCC Gene: Jann_0818: Malate dehydrogenase (EC 1.1.1.37) |
Gene: SKA53_14541: Malate dehydrogenase (EC 1.1.1.37) |
Gene: OA2633_09359: Malate dehydrogenase (EC 1.1.1.37) |
*
Oceanicola batsensis HTCC2597 Site: position = -60 score = 3.67223 sequence = CGCTGATCCCGCAAAATGCC Gene: OB2597_09589: Malate dehydrogenase (EC 1.1.1.37) |
Gene: OG2516_08112: Malate dehydrogenase (EC 1.1.1.37) |
Gene: Pden_0561: Malate dehydrogenase (EC 1.1.1.37) |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -70 score = 5.04944 sequence = TGCCTTTAGCGCAAACATCT Gene: RSP_0968: Malate dehydrogenase (EC 1.1.1.37) |
*
Rhodobacterales bacterium HTCC2654 Site: position = -121 score = 4.37781 sequence = CACCTTTAGCGGTATCAACG Gene: RB2654_17316: Malate dehydrogenase (EC 1.1.1.37) |
Gene: MED193_10538: Malate dehydrogenase (EC 1.1.1.37) |
Gene: ISM_05055: Malate dehydrogenase (EC 1.1.1.37) |
Gene: ROS217_06920: Malate dehydrogenase (EC 1.1.1.37) |
Gene: TM1040_3517: Malate dehydrogenase (EC 1.1.1.37) |
*
Silicibacter pomeroyi DSS-3 Site: position = -130 score = 4.8194 sequence = CGCTTTTAGCGCAATCACCC Gene: SPO0349: Malate dehydrogenase (EC 1.1.1.37) |
Gene: EE36_09395: Malate dehydrogenase (EC 1.1.1.37) |
Malate dehydrogenase (EC 1.1.1.37) |
| CRON 11. | ||||||||||||||||
| tal |
Gene: HNE_3235: Transaldolase (EC 2.2.1.2) |
*
Jannaschia sp. CCS1 Site: position = -71 score = 5.69881 sequence = TTCCGTTAGCGCTAACATGC Gene: Jann_1032: Transaldolase (EC 2.2.1.2) |
Gene: SKA53_09619: Transaldolase (EC 2.2.1.2) |
Gene: OA2633_07484: Transaldolase (EC 2.2.1.2) |
*
Oceanicola batsensis HTCC2597 Site: position = -133 score = 4.79561 sequence = TTTCGTTAGCGCTAGCAGAA Gene: OB2597_15590: Transaldolase (EC 2.2.1.2) |
Gene: OG2516_14516: Transaldolase (EC 2.2.1.2) |
Gene: Pden_2499: Transaldolase (EC 2.2.1.2) |
Gene: RSP_0561: Transaldolase (EC 2.2.1.2) |
*
Rhodobacterales bacterium HTCC2654 Site: position = -47 score = 4.19251 sequence = GTATGACACCGCTAACATTT Gene: RB2654_18993: Transaldolase (EC 2.2.1.2) |
*
Roseobacter sp. MED193 Site: position = -48 score = 3.98783 sequence = AAAGGCTAGCGCAATCAAGG Gene: MED193_09260: Transaldolase (EC 2.2.1.2) |
*
Roseovarius nubinhibens ISM Site: position = -123 score = 3.60535 sequence = GGCGGTTTGCGGCAAATTAT Gene: ISM_03480: Transaldolase (EC 2.2.1.2) |
Gene: ROS217_22537: Transaldolase (EC 2.2.1.2) |
*
Silicibacter TM1040 Site: position = -129 score = 5.31407 sequence = CGCTGTTTACGCTAACATGC Gene: TM1040_2379: Transaldolase (EC 2.2.1.2) |
Gene: SPO3128: Transaldolase (EC 2.2.1.2) |
Gene: EE36_09675: Transaldolase (EC 2.2.1.2) |
Transaldolase (EC 2.2.1.2) |
| CRON 12. | ||||||||||||||||
| cceR |
|
Gene: Jann_0311: Transcriptional regulator for central carbohydrate metabolism, LacI family |
Gene: SKA53_12393: Transcriptional regulator for central carbohydrate metabolism, LacI family |
|
Gene: OB2597_14566: Transcriptional regulator for central carbohydrate metabolism, LacI family |
Gene: OG2516_09665: Transcriptional regulator for central carbohydrate metabolism, LacI family |
*
Paracoccus denitrificans PD1222 Site: position = -39 score = 4.05629 sequence = AAAAGATAACGGTAACATGA Gene: Pden_1978: Transcriptional regulator for central carbohydrate metabolism, LacI family |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -98 score = 5.47667 sequence = GGCCGTTATCGCTAACATGG Gene: RSP_1663: Transcriptional regulator for central carbohydrate metabolism, LacI family |
Gene: RB2654_15484: Transcriptional regulator for central carbohydrate metabolism, LacI family |
Gene: MED193_14932: Transcriptional regulator for central carbohydrate metabolism, LacI family |
*
Roseovarius nubinhibens ISM Site: position = -48 score = 4.55831 sequence = CACCGTTCGCGATAACATTT Gene: ISM_08560: Transcriptional regulator for central carbohydrate metabolism, LacI family |
*
Roseovarius sp. 217 Site: position = -46 score = 4.56041 sequence = GGGCGTTCGCGGTAACAATG Gene: ROS217_09370: Transcriptional regulator for central carbohydrate metabolism, LacI family |
Gene: TM1040_3128: Transcriptional regulator for central carbohydrate metabolism, LacI family |
*
Silicibacter pomeroyi DSS-3 Site: position = -49 score = 4.59427 sequence = TGCCGTTCGCGCTAGCATCG Gene: SPO3684: Transcriptional regulator for central carbohydrate metabolism, LacI family |
Gene: EE36_07953: Transcriptional regulator for central carbohydrate metabolism, LacI family |
Transcriptional regulator for central carbohydrate metabolism, LacI family |
| PF06224 |
|
|
|
|
Gene: OB2597_14561: protein of unknown function DUF1006 |
|
|
|
|
Gene: MED193_14937: protein of unknown function DUF1006 |
|
|
|
Gene: SPO3685: protein of unknown function DUF1006 |
Gene: EE36_07948: protein of unknown function DUF1006 |
protein of unknown function DUF1006 |
| CRON 13. | ||||||||||||||||
| fba |
|
*
Jannaschia sp. CCS1 Site: position = -80 score = 4.80324 sequence = GCCTGATAGCGCAACCATGA Gene: Jann_1693: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
*
Loktanella vestfoldensis SKA53 Site: position = -104 score = 5.27298 sequence = CGCCGTTTGCGATAACATCC Site: position = -83 score = 5.08957 sequence = GTCCGTTCGCGCTAACATAT Gene: SKA53_05615: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
|
*
Oceanicola batsensis HTCC2597 Site: position = -100 score = 5.22854 sequence = GGGCGTTAGCGCCAACGGGC Gene: OB2597_04490: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
*
Oceanicola granulosus HTCC2516 Site: position = -82 score = 4.99268 sequence = CCCCGGTGGCGCTAACAGGT Gene: OG2516_03238: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
*
Paracoccus denitrificans PD1222 Site: position = -74 score = 4.58911 sequence = TTCCGTTAGCGCAATCGCGA Gene: Pden_1920: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -79 score = 4.86649 sequence = CCAAGTTAGCGCGAACAACA Gene: RSP_4045: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
*
Rhodobacterales bacterium HTCC2654 Site: position = -81 score = 4.37147 sequence = ATGCGTTAGCGCGACCAGAA Gene: RB2654_05195: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
*
Roseobacter sp. MED193 Site: position = -100 score = 4.73747 sequence = GCCCGTTAGCGCAAGCGCTT Gene: MED193_20764: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
*
Roseovarius nubinhibens ISM Site: position = -80 score = 4.57869 sequence = AGGCGTTAGCGCCACCAAGA Gene: ISM_04665: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
*
Roseovarius sp. 217 Site: position = -85 score = 4.66792 sequence = TTCTGTTAGCGCCACCACGA Gene: ROS217_17772: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
*
Silicibacter TM1040 Site: position = -105 score = 5.02094 sequence = GGGCGTTAGCGCAACCATTG Gene: TM1040_1976: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
*
Silicibacter pomeroyi DSS-3 Site: position = -83 score = 4.34295 sequence = GTAGTTGAGCGCTAACATCC Gene: SPO1899: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
Gene: EE36_15612: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
| CRON 14. | ||||||||||||||||
| eno |
Gene: HNE_1980: Enolase (EC 4.2.1.11) |
*
Jannaschia sp. CCS1 Site: position = -84 score = 5.35326 sequence = GCCTGTTACCGCTAACGGAA Gene: Jann_1797: Enolase (EC 4.2.1.11) |
*
Loktanella vestfoldensis SKA53 Site: position = -38 score = 5.11504 sequence = CACTGATACCGCTAACATCG Gene: SKA53_03091: Enolase (EC 4.2.1.11) |
Gene: OA2633_02606: Enolase (EC 4.2.1.11) |
*
Oceanicola batsensis HTCC2597 Site: position = -97 score = 5.26688 sequence = ATCTGTTTGCGCAAACGCCC Gene: OB2597_02982: Enolase (EC 4.2.1.11) |
*
Oceanicola granulosus HTCC2516 Site: position = -36 score = 5.13666 sequence = GTCCGATAGCGCAAACATCT Gene: OG2516_03740: Enolase (EC 4.2.1.11) |
Gene: Pden_4060: Enolase (EC 4.2.1.11) |
Gene: RSP_2491: Enolase (EC 4.2.1.11) |
*
Rhodobacterales bacterium HTCC2654 Site: position = -85 score = 4.44282 sequence = CACCGTTGGCGCAACCGCCC Gene: RB2654_03084: Enolase (EC 4.2.1.11) |
*
Roseobacter sp. MED193 Site: position = -136 score = 4.52696 sequence = TACCGGTGGCGCAAACAGGT Site: position = -116 score = 4.03552 sequence = GAATGGTAACGTTAACTGTG Site: position = -87 score = 5.05922 sequence = TGCCGTTAGCGGTAACGAAG Gene: MED193_22551: Enolase (EC 4.2.1.11) |
*
Roseovarius nubinhibens ISM Site: position = -85 score = 5.18488 sequence = TCGTGTTAGCGATAACATAT Site: position = -126 score = 4.08704 sequence = AACCGTTACCGGCATCATCG Gene: ISM_16480: Enolase (EC 4.2.1.11) |
Gene: ROS217_21722: Enolase (EC 4.2.1.11) |
*
Silicibacter TM1040 Site: position = -214 score = 4.10657 sequence = AAGGGTGAGCGCTATCATCT Site: position = -89 score = 5.09232 sequence = AGCCGTTAGCGGTAACGCTT Gene: TM1040_0931: Enolase (EC 4.2.1.11) |
*
Silicibacter pomeroyi DSS-3 Site: position = -137 score = 5.41595 sequence = CGCTGTTGGCGCAAACAGGG Site: position = -117 score = 4.86259 sequence = ATGTGTTAGCCCTAACTGCG Site: position = -88 score = 4.85504 sequence = GCGTGTTAGCGATAGCAGTC Gene: SPO2474: Enolase (EC 4.2.1.11) |
*
Sulfitobacter sp. EE-36 Site: position = -148 score = 4.68659 sequence = CTATGTTGGCGCAACCATCA Gene: EE36_15917: Enolase (EC 4.2.1.11) |
Enolase (EC 4.2.1.11) |
| CRON 15. | ||||||||||||||||
| yedI |
|
*
Jannaschia sp. CCS1 Site: position = -148 score = 4.91749 sequence = GGGTGGTGGCGCTAACACGG Site: position = -167 score = 4.61602 sequence = AAACGGTGGCGCAAACATCG Site: position = -179 score = 5.21564 sequence = GCATGTTAGCGGAAACGGTG Gene: Jann_1699: conserved inner membrane protein |
|
|
Gene: OB2597_09279: conserved inner membrane protein |
|
Gene: Pden_2188: conserved inner membrane protein |
Gene: RSP_2958: conserved inner membrane protein |
*
Rhodobacterales bacterium HTCC2654 Site: position = -138 score = 4.34998 sequence = GGGCGTTAGCGGAACCGTTA Site: position = -126 score = 4.72272 sequence = AACCGTTAACGCAAACGCGG Site: position = -168 score = 5.12834 sequence = GCGTGTTAGCGAAAACATAT Gene: RB2654_02434: conserved inner membrane protein |
*
Roseobacter sp. MED193 Site: position = -156 score = 4.63593 sequence = GTATGTTAGCGCAAAACTAG Site: position = -137 score = 4.10276 sequence = GACCGGTGGCGTTAACGGTT Site: position = -82 score = 4.51909 sequence = ACACGGTGGCGCTAACGCTT Gene: MED193_03562: conserved inner membrane protein |
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Gene: ROS217_07160: conserved inner membrane protein |
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Silicibacter TM1040 Site: position = -124 score = 4.77904 sequence = CGGCGTTTGCGGTAACTGTT Site: position = -148 score = 4.29756 sequence = TGATGGTGGCGTTAACACCT Site: position = -167 score = 4.46636 sequence = GACTGTTAGCGCAAAACCTT Gene: TM1040_1112: conserved inner membrane protein |
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Silicibacter pomeroyi DSS-3 Site: position = -99 score = 5.39997 sequence = AGGTGTTAGCGCAAACTTGC Site: position = -80 score = 4.83285 sequence = CCCCGGTTGCGCTAACGCTT Gene: SPO2197: conserved inner membrane protein |
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Sulfitobacter sp. EE-36 Site: position = -83 score = 4.56103 sequence = TCGTGTTAGCGATAACCCTC Site: position = -102 score = 4.48925 sequence = GTATGTTAGCGATAAATATT Gene: EE36_13593: conserved inner membrane protein |
conserved inner membrane protein |
| CRON 16. | ||||||||||||||||
| scrK |
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Jannaschia sp. CCS1 Site: position = -40 score = 4.8023 sequence = AAAGGTTACCGCTAACACGT Gene: Jann_2674: Fructokinase (EC 2.7.1.4) |
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Loktanella vestfoldensis SKA53 Site: position = -40 score = 5.40641 sequence = ATTTGTTATCGCTAACAGCC Gene: SKA53_01436: Fructokinase (EC 2.7.1.4) |
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Gene: OG2516_06047: Fructokinase (EC 2.7.1.4) |
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Paracoccus denitrificans PD1222 Site: position = -77 score = 4.8528 sequence = GGCAGTTACCGCTATCAGGA Gene: Pden_2946: Fructokinase (EC 2.7.1.4) |
Gene: RSP_2257: Fructokinase (EC 2.7.1.4) |
*2
Rhodobacterales bacterium HTCC2654 Site: position = -36 score = 5.05161 sequence = GACTGATACCGCTAACAACC Site: position = -68 score = 4.0791 sequence = GGGTGATTGCGCAATCCGCG Gene: RB2654_08617: Fructokinase (EC 2.7.1.4) Gene: RB2654_08622: Fructokinase (EC 2.7.1.4) |
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Silicibacter TM1040 Site: position = -93 score = 4.71903 sequence = AAATGTTAGCGCTTTCAGGT Gene: TM1040_3042: Fructokinase (EC 2.7.1.4) |
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Silicibacter pomeroyi DSS-3 Site: position = -48 score = 3.77792 sequence = GCCGGTTTGCGCTGAGATGC Gene: SPOA0276: Fructokinase (EC 2.7.1.4) |
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Fructokinase (EC 2.7.1.4) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |