Regulon of CceR (GapR) in Jannaschia sp. CCS1
| Regulator type: | Transcription factor |
| TF locus tag: | Jann_0311 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 6-phosphogluconate |
| Regulog: | CceR (GapR) - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 14 |
| - Operons | 12 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - LacI
- By effector - 6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -63
Score: 5.4 Sequence: CCCTGTTACCGCTAACACAC
Locus tag: Jann_1695
Name: gapB Funciton: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
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gapB
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Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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Position: -40
Score: 4.8 Sequence: AAAGGTTACCGCTAACACGT
Locus tag: Jann_2674
Name: scrK Funciton: Fructokinase (EC 2.7.1.4) |
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scrK
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Fructokinase (EC 2.7.1.4)
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Position: -71
Score: 5.7 Sequence: TTCCGTTAGCGCTAACATGC
Locus tag: Jann_1032
Name: tal Funciton: Transaldolase (EC 2.2.1.2) |
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tal
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Transaldolase (EC 2.2.1.2)
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Position: -101
Score: 4.1 Sequence: GGGCGTTGGGGCTATCGGCC
Locus tag: Jann_0818
Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) |
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mdh
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Malate dehydrogenase (EC 1.1.1.37)
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Position: -55
Score: 5.8 Sequence: ACATGTTAGCGCTAACATGA
Locus tag: Jann_1953
Name: edd Funciton: Phosphogluconate dehydratase (EC 4.2.1.12) |
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edd
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Phosphogluconate dehydratase (EC 4.2.1.12)
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Position: -37
Score: 5.8 Sequence: CGCTGTTAGCGCTAACGTGA
Locus tag: Jann_1969
Name: zwf Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Jann_1970
Name: pgl Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Jann_1971
Name: pgi Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
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zwf
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Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
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pgl
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6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
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pgi
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Glucose-6-phosphate isomerase (EC 5.3.1.9)
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Position: -128
Score: 4.9 Sequence: CCGTGTTAGCGCCACCACCC
Position: -109
Score: 4.6 Sequence: CGATGTTTGCGCCACCGTTT
Position: -97
Score: 5.2 Sequence: CACCGTTTCCGCTAACATGC
Locus tag: Jann_1698
Name: gapA Funciton: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
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gapA
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Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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Position: -138
Score: 4.9 Sequence: GTATGGTTGCGCTAACTGTG
Locus tag: Jann_0535
Name: pckA Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
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pckA
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Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
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Position: -80
Score: 5.3 Sequence: GACTGATAGCGCAAACATCG
Locus tag: Jann_0447
Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40) |
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pykA
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Pyruvate kinase (EC 2.7.1.40)
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Position: -179
Score: 5.2 Sequence: GCATGTTAGCGGAAACGGTG
Position: -167
Score: 4.6 Sequence: AAACGGTGGCGCAAACATCG
Position: -148
Score: 4.9 Sequence: GGGTGGTGGCGCTAACACGG
Locus tag: Jann_1699
Name: yedI Funciton: conserved inner membrane protein |
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yedI
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conserved inner membrane protein
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Position: -80
Score: 4.8 Sequence: GCCTGATAGCGCAACCATGA
Locus tag: Jann_1693
Name: fba Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
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fba
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Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
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Position: -84
Score: 5.4 Sequence: GCCTGTTACCGCTAACGGAA
Locus tag: Jann_1797
Name: eno Funciton: Enolase (EC 4.2.1.11) |
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eno
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Enolase (EC 4.2.1.11)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |