Regulon of CceR (GapR) in Silicibacter pomeroyi DSS-3

Properties
Regulator type:	Transcription factor
TF locus tag:	SPO3684
Regulator family:	LacI
Regulation mode:
Biological process:	Central carbohydrate metabolism
Effector:	6-phosphogluconate
Regulog:	CceR (GapR) - Rhodobacterales
Statistics of regulated genes:
- Genes	18
- Operons	13
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 177 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By TF family - LacI
By effector - 6-phosphogluconate
By pathway - Central carbohydrate metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -49 Score: 4.6 Sequence: TGCCGTTCGCGCTAGCATCG Locus tag: SPO3684 Name: cceR Funciton: Transcriptional regulator for central carbohydrate metabolism, LacI family Locus tag: SPO3685 Name: PF06224 Funciton: protein of unknown function DUF1006
	SPO3684	cceR	Transcriptional regulator for central carbohydrate metabolism, LacI family
	SPO3685	PF06224	protein of unknown function DUF1006
Position: -130 Score: 4.8 Sequence: CGCTTTTAGCGCAATCACCC Locus tag: SPO0349 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37)
	SPO0349	mdh	Malate dehydrogenase (EC 1.1.1.37)
Position: -104 Score: 4.4 Sequence: GGATGCGAGCGATAACATGC Locus tag: SPO1171 Name: pycA Funciton: Pyruvate carboxyl transferase (EC 6.4.1.1)
	SPO1171	pycA	Pyruvate carboxyl transferase (EC 6.4.1.1)
Position: -43 Score: 5.2 Sequence: GGATGTTTGCGGTAACATAA Locus tag: SPO3600 Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40)
	SPO3600	pykA	Pyruvate kinase (EC 2.7.1.40)
Position: -59 Score: 5.5 Sequence: TTTTGTTAGCGCTAACAAAT Locus tag: SPO0701 Name: gapB Funciton: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
	SPO0701	gapB	Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -123 Score: 4.8 Sequence: AAGCGTTAGCGCAACCGGGG Position: -104 Score: 5.4 Sequence: GCAAGTTTGCGCTAACACCT Locus tag: SPO2198 Name: gapA Funciton: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
	SPO2198	gapA	Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -172 Score: 4 Sequence: TCTTGGTTGCGCTAAACTAT Position: -151 Score: 5 Sequence: CCTTGGTTGCGCTAACTGCG Locus tag: SPO0709 Name: pckA Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
	SPO0709	pckA	Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
Position: -48 Score: 3.8 Sequence: GCCGGTTTGCGCTGAGATGC Locus tag: SPOA0276 Name: scrK Funciton: Fructokinase (EC 2.7.1.4)
	SPOA0276	scrK	Fructokinase (EC 2.7.1.4)
Position: -53 Score: 5.6 Sequence: AAATGTTTGCGCTAACAGTG Locus tag: SPO2048 Name: zwf Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Locus tag: SPO2047 Name: pgl Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Locus tag: SPO2046 Name: pgi Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
	SPO2048	zwf	Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
	SPO2047	pgl	6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
	SPO2046	pgi	Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -65 Score: 5.5 Sequence: ACATGTTAGCGGTAACATTG Locus tag: SPO3033 Name: zwf Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Locus tag: SPO3032 Name: edd Funciton: Phosphogluconate dehydratase (EC 4.2.1.12) Locus tag: SPO3031 Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
	SPO3033	zwf	Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
	SPO3032	edd	Phosphogluconate dehydratase (EC 4.2.1.12)
	SPO3031	eda	2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -83 Score: 4.3 Sequence: GTAGTTGAGCGCTAACATCC Locus tag: SPO1899 Name: fba Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
	SPO1899	fba	Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
Position: -99 Score: 5.4 Sequence: AGGTGTTAGCGCAAACTTGC Position: -80 Score: 4.8 Sequence: CCCCGGTTGCGCTAACGCTT Locus tag: SPO2197 Name: yedI Funciton: conserved inner membrane protein
	SPO2197	yedI	conserved inner membrane protein
Position: -137 Score: 5.4 Sequence: CGCTGTTGGCGCAAACAGGG Position: -117 Score: 4.9 Sequence: ATGTGTTAGCCCTAACTGCG Position: -88 Score: 4.9 Sequence: GCGTGTTAGCGATAGCAGTC Locus tag: SPO2474 Name: eno Funciton: Enolase (EC 4.2.1.11)
	SPO2474	eno	Enolase (EC 4.2.1.11)

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of CceR (GapR) in Silicibacter pomeroyi DSS-3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --