Regulon of CceR (GapR) in Oceanicola batsensis HTCC2597
| Regulator type: | Transcription factor |
| TF locus tag: | OB2597_14566 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 6-phosphogluconate |
| Regulog: | CceR (GapR) - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 10 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - LacI
- By effector - 6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -54
Score: 5.2 Sequence: CATTGTTACCGCTAACAAAG
Locus tag: OB2597_02267
Name: edd Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: OB2597_02272
Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
|||
|
edd
|
Phosphogluconate dehydratase (EC 4.2.1.12)
|
||
|
eda
|
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
|
||
|
Position: -133
Score: 4.8 Sequence: TTTCGTTAGCGCTAGCAGAA
Locus tag: OB2597_15590
Name: tal Funciton: Transaldolase (EC 2.2.1.2) |
|||
|
tal
|
Transaldolase (EC 2.2.1.2)
|
||
|
Position: -60
Score: 3.7 Sequence: CGCTGATCCCGCAAAATGCC
Locus tag: OB2597_09589
Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) |
|||
|
mdh
|
Malate dehydrogenase (EC 1.1.1.37)
|
||
|
Position: -52
Score: 4 Sequence: GATTGATAGCGTTCACATGA
Locus tag: OB2597_10686
Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40) |
|||
|
pykA
|
Pyruvate kinase (EC 2.7.1.40)
|
||
|
Position: -47
Score: 4.2 Sequence: CTATGTTAGCGCCCAAACTC
Locus tag: OB2597_02942
Name: zwf Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: OB2597_02947
Name: pgl Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: OB2597_02952
Name: pgi Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
|||
|
zwf
|
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
|
||
|
pgl
|
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
|
||
|
pgi
|
Glucose-6-phosphate isomerase (EC 5.3.1.9)
|
||
|
Position: -141
Score: 4.9 Sequence: GCCTGTTAGCGCCAACCCTC
Position: -119
Score: 4.9 Sequence: ACGGGTTAGCGCCAACAGGC
Position: -100
Score: 4.4 Sequence: CCGGTTTATCGCTAACATAC
Locus tag: OB2597_01292
Name: gapA Funciton: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
|||
|
gapA
|
Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
|
||
|
Position: -168
Score: 4.5 Sequence: GGGTGATTGCGCTAAAGTTT
Position: -148
Score: 4.7 Sequence: ACTTGGTGGCGCTAACTGCG
Locus tag: OB2597_10169
Name: pckA Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
|||
|
pckA
|
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
|
||
|
Position: -100
Score: 5.2 Sequence: GGGCGTTAGCGCCAACGGGC
Locus tag: OB2597_04490
Name: fba Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
|||
|
fba
|
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
|
||
|
Position: -49
Score: 5.2 Sequence: CTATGTTAGCGTTAACGGAC
Locus tag: OB2597_01282
Name: gapB Funciton: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
|||
|
gapB
|
Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
|
||
|
Position: -97
Score: 5.3 Sequence: ATCTGTTTGCGCAAACGCCC
Locus tag: OB2597_02982
Name: eno Funciton: Enolase (EC 4.2.1.11) |
|||
|
eno
|
Enolase (EC 4.2.1.11)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |