Regulon of CceR (GapR) in Roseovarius nubinhibens ISM
| Regulator type: | Transcription factor |
| TF locus tag: | ISM_08560 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 6-phosphogluconate |
| Regulog: | CceR (GapR) - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 8 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - LacI
- By effector - 6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -48
Score: 4.6 Sequence: CACCGTTCGCGATAACATTT
Locus tag: ISM_08560
Name: cceR Funciton: Transcriptional regulator for central carbohydrate metabolism, LacI family |
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cceR
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Transcriptional regulator for central carbohydrate metabolism, LacI family
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Position: -123
Score: 3.6 Sequence: GGCGGTTTGCGGCAAATTAT
Locus tag: ISM_03480
Name: tal Funciton: Transaldolase (EC 2.2.1.2) |
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tal
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Transaldolase (EC 2.2.1.2)
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Position: -82
Score: 5.1 Sequence: TGATGTTAGCGATAACGGTA
Locus tag: ISM_02615
Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40) |
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pykA
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Pyruvate kinase (EC 2.7.1.40)
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Position: -105
Score: 4.6 Sequence: GAAATTTATCGCTAACAAGG
Locus tag: ISM_10930
Name: gapA Funciton: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
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gapA
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Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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Position: -174
Score: 5.3 Sequence: CGCTGGTTGCGCTAACGTCC
Position: -154
Score: 4.6 Sequence: AATTGGTTGCGCTAACTCAG
Locus tag: ISM_13535
Name: pckA Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
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pckA
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Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
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Position: -302
Score: 4.6 Sequence: TTACGATAGCGGTAACGCCG
Locus tag: ISM_11730
Name: atpH Funciton: ATP synthase delta chain (EC 3.6.3.14)
Locus tag: ISM_11735
Name: atpA Funciton: ATP synthase alpha chain (EC 3.6.3.14)
Locus tag: ISM_11740
Name: atpG Funciton: ATP synthase gamma chain (EC 3.6.3.14)
Locus tag: ISM_11745
Name: atpD Funciton: ATP synthase beta chain (EC 3.6.3.14)
Locus tag: ISM_11750
Name: atpC Funciton: ATP synthase epsilon chain (EC 3.6.3.14)
Locus tag: ISM_11755
Name: atpI Funciton: ATP synthase protein I |
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atpH
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ATP synthase delta chain (EC 3.6.3.14)
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atpA
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ATP synthase alpha chain (EC 3.6.3.14)
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atpG
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ATP synthase gamma chain (EC 3.6.3.14)
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atpD
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ATP synthase beta chain (EC 3.6.3.14)
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atpC
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ATP synthase epsilon chain (EC 3.6.3.14)
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atpI
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ATP synthase protein I
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Position: -126
Score: 4.1 Sequence: AACCGTTACCGGCATCATCG
Position: -85
Score: 5.2 Sequence: TCGTGTTAGCGATAACATAT
Locus tag: ISM_16480
Name: eno Funciton: Enolase (EC 4.2.1.11) |
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eno
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Enolase (EC 4.2.1.11)
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Position: -80
Score: 4.6 Sequence: AGGCGTTAGCGCCACCAAGA
Locus tag: ISM_04665
Name: fba Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
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fba
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Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |