Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CceR (GapR) in Paracoccus denitrificans PD1222

Properties
Regulator type: Transcription factor
TF locus tag: Pden_1978
Regulator family: LacI
Regulation mode:
Biological process: Central carbohydrate metabolism
Effector: 6-phosphogluconate
Regulog: CceR (GapR) - Rhodobacterales
Statistics of regulated genes:
- Genes 17
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 177 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -65
Score: 4.1
Sequence: GCCTGAAACCGCTATCATCC
Locus tag: Pden_1952
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Pden_1951
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Pden_1950
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Pden_1952
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Pden_1951
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Pden_1950
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -32
Score: 5.2
Sequence: CGACGATAGCGCAAACATGC
Locus tag: Pden_2276
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Pden_2276
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -132
Score: 4.6
Sequence: AAATGATTGCGCTAACCGTC
Position: -113
Score: 4.5
Sequence: CTCTGATTGCGCTAACCCTG
Locus tag: Pden_2852
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
Pden_2852
pckA
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
Position: -74
Score: 4.6
Sequence: TTCCGTTAGCGCAATCGCGA
Locus tag: Pden_1920
Name: fba
Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
Pden_1920
fba
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
Position: -124
Score: 4
Sequence: CAATTGCACCGCTAACATCG
Locus tag: Pden_4465
Name: gapB
Funciton: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Pden_4465
gapB
Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -39
Score: 4.1
Sequence: AAAAGATAACGGTAACATGA
Locus tag: Pden_1978
Name: cceR
Funciton: Transcriptional regulator for central carbohydrate metabolism, LacI family
Pden_1978
cceR
Transcriptional regulator for central carbohydrate metabolism, LacI family
Position: -85
Score: 5
Sequence: CTCAGTTAACGCTAACACAC
Locus tag: Pden_1245
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Pden_1245
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -48
Score: 5.4
Sequence: CAATGTTACCGCTAACAGGA
Locus tag: Pden_1955
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Pden_1955
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Position: -77
Score: 4.9
Sequence: GGCAGTTACCGCTATCAGGA
Locus tag: Pden_2946
Name: scrK
Funciton: Fructokinase (EC 2.7.1.4)
Pden_2946
scrK
Fructokinase (EC 2.7.1.4)
Position: -153
Score: 4.7
Sequence: AGGTGTTTGCGCAATCGGTT
Locus tag: Pden_3815
Name: atpH
Funciton: ATP synthase delta chain (EC 3.6.3.14)
Locus tag: Pden_3816
Name: atpA
Funciton: ATP synthase alpha chain (EC 3.6.3.14)
Locus tag: Pden_3817
Name: atpG
Funciton: ATP synthase gamma chain (EC 3.6.3.14)
Locus tag: Pden_3818
Name: atpD
Funciton: ATP synthase beta chain (EC 3.6.3.14)
Locus tag: Pden_3819
Name: atpC
Funciton: ATP synthase epsilon chain (EC 3.6.3.14)
Locus tag: Pden_3820
Name: atpI
Funciton: ATP synthase protein I
Pden_3815
atpH
ATP synthase delta chain (EC 3.6.3.14)
Pden_3816
atpA
ATP synthase alpha chain (EC 3.6.3.14)
Pden_3817
atpG
ATP synthase gamma chain (EC 3.6.3.14)
Pden_3818
atpD
ATP synthase beta chain (EC 3.6.3.14)
Pden_3819
atpC
ATP synthase epsilon chain (EC 3.6.3.14)
Pden_3820
atpI
ATP synthase protein I
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