Regulon of CceR (GapR) in Paracoccus denitrificans PD1222
| Regulator type: | Transcription factor |
| TF locus tag: | Pden_1978 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 6-phosphogluconate |
| Regulog: | CceR (GapR) - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 17 |
| - Operons | 10 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - LacI
- By effector - 6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -65
Score: 4.1 Sequence: GCCTGAAACCGCTATCATCC
Locus tag: Pden_1952
Name: zwf Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Pden_1951
Name: pgl Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Pden_1950
Name: pgi Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
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zwf
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Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
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pgl
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6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
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pgi
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Glucose-6-phosphate isomerase (EC 5.3.1.9)
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Position: -32
Score: 5.2 Sequence: CGACGATAGCGCAAACATGC
Locus tag: Pden_2276
Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40) |
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pykA
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Pyruvate kinase (EC 2.7.1.40)
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Position: -132
Score: 4.6 Sequence: AAATGATTGCGCTAACCGTC
Position: -113
Score: 4.5 Sequence: CTCTGATTGCGCTAACCCTG
Locus tag: Pden_2852
Name: pckA Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
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pckA
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Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
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Position: -74
Score: 4.6 Sequence: TTCCGTTAGCGCAATCGCGA
Locus tag: Pden_1920
Name: fba Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
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fba
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Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
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Position: -124
Score: 4 Sequence: CAATTGCACCGCTAACATCG
Locus tag: Pden_4465
Name: gapB Funciton: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
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gapB
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Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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Position: -39
Score: 4.1 Sequence: AAAAGATAACGGTAACATGA
Locus tag: Pden_1978
Name: cceR Funciton: Transcriptional regulator for central carbohydrate metabolism, LacI family |
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cceR
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Transcriptional regulator for central carbohydrate metabolism, LacI family
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Position: -85
Score: 5 Sequence: CTCAGTTAACGCTAACACAC
Locus tag: Pden_1245
Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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eda
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2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
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Position: -48
Score: 5.4 Sequence: CAATGTTACCGCTAACAGGA
Locus tag: Pden_1955
Name: edd Funciton: Phosphogluconate dehydratase (EC 4.2.1.12) |
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edd
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Phosphogluconate dehydratase (EC 4.2.1.12)
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Position: -77
Score: 4.9 Sequence: GGCAGTTACCGCTATCAGGA
Locus tag: Pden_2946
Name: scrK Funciton: Fructokinase (EC 2.7.1.4) |
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scrK
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Fructokinase (EC 2.7.1.4)
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Position: -153
Score: 4.7 Sequence: AGGTGTTTGCGCAATCGGTT
Locus tag: Pden_3815
Name: atpH Funciton: ATP synthase delta chain (EC 3.6.3.14)
Locus tag: Pden_3816
Name: atpA Funciton: ATP synthase alpha chain (EC 3.6.3.14)
Locus tag: Pden_3817
Name: atpG Funciton: ATP synthase gamma chain (EC 3.6.3.14)
Locus tag: Pden_3818
Name: atpD Funciton: ATP synthase beta chain (EC 3.6.3.14)
Locus tag: Pden_3819
Name: atpC Funciton: ATP synthase epsilon chain (EC 3.6.3.14)
Locus tag: Pden_3820
Name: atpI Funciton: ATP synthase protein I |
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atpH
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ATP synthase delta chain (EC 3.6.3.14)
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atpA
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ATP synthase alpha chain (EC 3.6.3.14)
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atpG
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ATP synthase gamma chain (EC 3.6.3.14)
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atpD
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ATP synthase beta chain (EC 3.6.3.14)
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atpC
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ATP synthase epsilon chain (EC 3.6.3.14)
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atpI
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ATP synthase protein I
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |