Regulon of CceR (GapR) in Roseobacter sp. MED193
| Regulator type: | Transcription factor |
| TF locus tag: | MED193_14932, MED193_10066 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 6-phosphogluconate |
| Regulog: | CceR (GapR) - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 11 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - LacI
- By effector - 6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -48
Score: 4 Sequence: AAAGGCTAGCGCAATCAAGG
Locus tag: MED193_09260
Name: tal Funciton: Transaldolase (EC 2.2.1.2) |
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tal
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Transaldolase (EC 2.2.1.2)
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Position: -104
Score: 4.2 Sequence: GAATGAGAGCGCAATCATGC
Locus tag: MED193_07548
Name: pycA Funciton: Pyruvate carboxyl transferase (EC 6.4.1.1) |
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pycA
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Pyruvate carboxyl transferase (EC 6.4.1.1)
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Position: -77
Score: 5 Sequence: TACCGTTATCGCTAACAGTA
Locus tag: MED193_17414
Name: pgi Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Locus tag: MED193_17419
Name: zwf Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: MED193_17424
Name: edd Funciton: Phosphogluconate dehydratase (EC 4.2.1.12) |
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pgi
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Glucose-6-phosphate isomerase (EC 5.3.1.9)
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zwf
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Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
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edd
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Phosphogluconate dehydratase (EC 4.2.1.12)
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Position: -110
Score: 4 Sequence: CTCCGTTATCGATACCGATA
Position: -88
Score: 4.9 Sequence: TAATGTTAGCGATAACGAAT
Locus tag: MED193_10071
Name: gapB Funciton: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
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gapB
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Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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Position: -132
Score: 4.5 Sequence: AAGCGTTAGCGCCACCGTGT
Position: -99
Score: 3.9 Sequence: TCCCGTTAACGCCACCGGTA
Position: -77
Score: 4.1 Sequence: AACCGTTAACGCCACCGGTC
Position: -58
Score: 4.6 Sequence: CTAGTTTTGCGCTAACATAC
Locus tag: MED193_03557
Name: gapA Funciton: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
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gapA
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Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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Position: -183
Score: 4.3 Sequence: CAATGGTTGCGCTAAACTCC
Position: -162
Score: 4.8 Sequence: CCTTGGTGGCGCTAACTGCG
Position: -95
Score: 3.7 Sequence: AACCGGTGGCGATACCGGCA
Locus tag: MED193_16479
Name: pckA Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
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pckA
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Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
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Position: -78
Score: 5.2 Sequence: TGCTGTTTGCGGTAACATTT
Locus tag: MED193_12017
Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40) |
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pykA
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Pyruvate kinase (EC 2.7.1.40)
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Position: -100
Score: 4.7 Sequence: GCCCGTTAGCGCAAGCGCTT
Locus tag: MED193_20764
Name: fba Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13) |
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fba
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Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
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Position: -136
Score: 4.5 Sequence: TACCGGTGGCGCAAACAGGT
Position: -116
Score: 4 Sequence: GAATGGTAACGTTAACTGTG
Position: -87
Score: 5.1 Sequence: TGCCGTTAGCGGTAACGAAG
Locus tag: MED193_22551
Name: eno Funciton: Enolase (EC 4.2.1.11) |
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eno
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Enolase (EC 4.2.1.11)
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Position: -119
Score: 4.9 Sequence: ATTCGTTATCGCTAACATTA
Locus tag: MED193_10066
Name: cceR2 Funciton: Transcriptional regulator, LacI family |
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cceR2
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Transcriptional regulator, LacI family
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Position: -156
Score: 4.6 Sequence: GTATGTTAGCGCAAAACTAG
Position: -137
Score: 4.1 Sequence: GACCGGTGGCGTTAACGGTT
Position: -82
Score: 4.5 Sequence: ACACGGTGGCGCTAACGCTT
Locus tag: MED193_03562
Name: yedI Funciton: conserved inner membrane protein |
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yedI
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conserved inner membrane protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |