Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CceR (GapR) in Roseobacter sp. MED193

Properties
Regulator type: Transcription factor
TF locus tag: MED193_14932, MED193_10066
Regulator family: LacI
Regulation mode:
Biological process: Central carbohydrate metabolism
Effector: 6-phosphogluconate
Regulog: CceR (GapR) - Rhodobacterales
Statistics of regulated genes:
- Genes 13
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 177 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -48
Score: 4
Sequence: AAAGGCTAGCGCAATCAAGG
Locus tag: MED193_09260
Name: tal
Funciton: Transaldolase (EC 2.2.1.2)
MED193_09260
tal
Transaldolase (EC 2.2.1.2)
Position: -104
Score: 4.2
Sequence: GAATGAGAGCGCAATCATGC
Locus tag: MED193_07548
Name: pycA
Funciton: Pyruvate carboxyl transferase (EC 6.4.1.1)
MED193_07548
pycA
Pyruvate carboxyl transferase (EC 6.4.1.1)
Position: -77
Score: 5
Sequence: TACCGTTATCGCTAACAGTA
Locus tag: MED193_17414
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Locus tag: MED193_17419
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: MED193_17424
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
MED193_17414
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
MED193_17419
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
MED193_17424
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Position: -110
Score: 4
Sequence: CTCCGTTATCGATACCGATA
Position: -88
Score: 4.9
Sequence: TAATGTTAGCGATAACGAAT
Locus tag: MED193_10071
Name: gapB
Funciton: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
MED193_10071
gapB
Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -132
Score: 4.5
Sequence: AAGCGTTAGCGCCACCGTGT
Position: -99
Score: 3.9
Sequence: TCCCGTTAACGCCACCGGTA
Position: -77
Score: 4.1
Sequence: AACCGTTAACGCCACCGGTC
Position: -58
Score: 4.6
Sequence: CTAGTTTTGCGCTAACATAC
Locus tag: MED193_03557
Name: gapA
Funciton: Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
MED193_03557
gapA
Gllyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -183
Score: 4.3
Sequence: CAATGGTTGCGCTAAACTCC
Position: -162
Score: 4.8
Sequence: CCTTGGTGGCGCTAACTGCG
Position: -95
Score: 3.7
Sequence: AACCGGTGGCGATACCGGCA
Locus tag: MED193_16479
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
MED193_16479
pckA
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
Position: -78
Score: 5.2
Sequence: TGCTGTTTGCGGTAACATTT
Locus tag: MED193_12017
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
MED193_12017
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -100
Score: 4.7
Sequence: GCCCGTTAGCGCAAGCGCTT
Locus tag: MED193_20764
Name: fba
Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
MED193_20764
fba
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
Position: -136
Score: 4.5
Sequence: TACCGGTGGCGCAAACAGGT
Position: -116
Score: 4
Sequence: GAATGGTAACGTTAACTGTG
Position: -87
Score: 5.1
Sequence: TGCCGTTAGCGGTAACGAAG
Locus tag: MED193_22551
Name: eno
Funciton: Enolase (EC 4.2.1.11)
MED193_22551
eno
Enolase (EC 4.2.1.11)
Position: -119
Score: 4.9
Sequence: ATTCGTTATCGCTAACATTA
Locus tag: MED193_10066
Name: cceR2
Funciton: Transcriptional regulator, LacI family
MED193_10066
cceR2
Transcriptional regulator, LacI family
Position: -156
Score: 4.6
Sequence: GTATGTTAGCGCAAAACTAG
Position: -137
Score: 4.1
Sequence: GACCGGTGGCGTTAACGGTT
Position: -82
Score: 4.5
Sequence: ACACGGTGGCGCTAACGCTT
Locus tag: MED193_03562
Name: yedI
Funciton: conserved inner membrane protein
MED193_03562
yedI
conserved inner membrane protein
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