Regulon of IolR in Silicibacter TM1040
| Regulator type: | Transcription factor |
| TF locus tag: | TM1040_3344 |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Inositol utilization |
| Effector: | |
| Regulog: | IolR - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - LacI
- By pathway - Inositol utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -47
Score: 7.1 Sequence: TTTTGCAACCGGTTGCAAAC
Locus tag: TM1040_3347
Name: null Funciton: oxidoreductase
Locus tag: TM1040_3346
Name: iolE Funciton: myo-inositol catabolism protein
Locus tag: TM1040_3345
Name: null Funciton: oxidoreductase |
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oxidoreductase
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iolE
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myo-inositol catabolism protein
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oxidoreductase
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Position: -96
Score: 7.1 Sequence: GTTTGCAACCGGTTGCAAAA
Locus tag: TM1040_3348
Name: iolD Funciton: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase
Locus tag: TM1040_3349
Name: iolC Funciton: 5-keto-2-deoxygluconokinase (EC 2.7.1.92)
Locus tag: TM1040_3350
Name: iolB Funciton: 5-deoxy-glucuronate isomerase (EC 5.3.1.-)
Locus tag: TM1040_3351
Name: iolJ Funciton: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)
Locus tag: TM1040_3352
Name: iolG Funciton: Myo-inositol 2-dehydrogenase EC=1.1.1.18 |
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iolD
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3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase
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iolC
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5-keto-2-deoxygluconokinase (EC 2.7.1.92)
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iolB
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5-deoxy-glucuronate isomerase (EC 5.3.1.-)
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iolJ
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5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)
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iolG
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Myo-inositol 2-dehydrogenase EC=1.1.1.18
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Position: -100
Score: 7.1 Sequence: CTTTGCAACCGGTTGCAAAA
Locus tag: TM1040_3344
Name: iolR Funciton: Transcriptional regulator of inositol utilization, LacI famil |
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iolR
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Transcriptional regulator of inositol utilization, LacI famil
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Position: -216
Score: 4.9 Sequence: TTCTGCAACCTCTTTCAACG
Position: -106
Score: 7.1 Sequence: TTTTGCAACCGGTTGCAAAG
Locus tag: TM1040_3343
Name: iolK Funciton: Sugar ABC transporter, substrate-binding protein
Locus tag: TM1040_3342
Name: iolL Funciton: Sugar ABC transporter, inner membrane protein
Locus tag: TM1040_3341
Name: iolM Funciton: Sugar ABC transporter, ATP-binding protein |
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iolK
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Sugar ABC transporter, substrate-binding protein
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iolL
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Sugar ABC transporter, inner membrane protein
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iolM
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Sugar ABC transporter, ATP-binding protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |