Regulog IolR - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Inositol utilization
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 13 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By TF family - LacI
By pathway - Inositol utilization

Statistics of regulated genes
Genome	Genes	Operons
Hyphomonas neptunium ATCC 15444
Jannaschia sp. CCS1	14	4
Loktanella vestfoldensis SKA53	13	4
Oceanicaulis alexandrii HTCC2633
Oceanicola batsensis HTCC2597
Oceanicola granulosus HTCC2516
Paracoccus denitrificans PD1222
Rhodobacter sphaeroides 2.4.1
Rhodobacterales bacterium HTCC2654
Roseobacter sp. MED193
Roseovarius nubinhibens ISM
Roseovarius sp. 217
Silicibacter TM1040	12	4
Silicibacter pomeroyi DSS-3
Sulfitobacter sp. EE-36

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
iolD	Hyphomonas neptunium ATCC 15444	* Jannaschia sp. CCS1 Site: position = -97 score = 6.93065 sequence = TGTTGCAACCGCTTGCAAAA Gene: Jann_1420: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase	* Loktanella vestfoldensis SKA53 Site: position = -84 score = 6.94521 sequence = GGTTGCAACCGGTTGCAAAA Gene: SKA53_08801: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	* Silicibacter TM1040 Site: position = -96 score = 7.12472 sequence = GTTTGCAACCGGTTGCAAAA Gene: TM1040_3348: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase
iolC	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1419: 5-keto-2-deoxygluconokinase (EC 2.7.1.92)	Loktanella vestfoldensis SKA53 Gene: SKA53_08796: 5-keto-2-deoxygluconokinase (EC 2.7.1.92)	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040 Gene: TM1040_3349: 5-keto-2-deoxygluconokinase (EC 2.7.1.92)	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	5-keto-2-deoxygluconokinase (EC 2.7.1.92)
iolB	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1418: 5-deoxy-glucuronate isomerase (EC 5.3.1.-)	Loktanella vestfoldensis SKA53 Gene: SKA53_08791: 5-deoxy-glucuronate isomerase (EC 5.3.1.-)	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040 Gene: TM1040_3350: 5-deoxy-glucuronate isomerase (EC 5.3.1.-)	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	5-deoxy-glucuronate isomerase (EC 5.3.1.-)
iolJ	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1417: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)	Loktanella vestfoldensis SKA53 Gene: SKA53_08786: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040 Gene: TM1040_3351: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)
iolG	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1416: Myo-inositol 2-dehydrogenase EC=1.1.1.18	Loktanella vestfoldensis SKA53 Gene: SKA53_08781: Myo-inositol 2-dehydrogenase EC=1.1.1.18	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040 Gene: TM1040_3352: Myo-inositol 2-dehydrogenase EC=1.1.1.18	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Myo-inositol 2-dehydrogenase EC=1.1.1.18

CRON 2.
Jann_1421	Hyphomonas neptunium ATCC 15444	* Jannaschia sp. CCS1 Site: position = -44 score = 6.93065 sequence = TTTTGCAAGCGGTTGCAACA Gene: Jann_1421: oxidoreductase	* Loktanella vestfoldensis SKA53 Site: position = -46 score = 6.94521 sequence = TTTTGCAACCGGTTGCAACC Gene: SKA53_08806: oxidoreductase	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	* Silicibacter TM1040 Site: position = -47 score = 7.12472 sequence = TTTTGCAACCGGTTGCAAAC Gene: TM1040_3347: oxidoreductase	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	oxidoreductase
iolE	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1422: myo-inositol catabolism protein	Loktanella vestfoldensis SKA53 Gene: SKA53_08811: myo-inositol catabolism protein	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040 Gene: TM1040_3346: myo-inositol catabolism protein	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	myo-inositol catabolism protein
Jann_1423	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1423: oxidoreductase	Loktanella vestfoldensis SKA53 Gene: SKA53_08816: oxidoreductase	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040 Gene: TM1040_3345: oxidoreductase	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	oxidoreductase

CRON 3.
iolR	Hyphomonas neptunium ATCC 15444	* Jannaschia sp. CCS1 Site: position = -95 score = 7.44503 sequence = TTTTGCAACCGGTTGCAAAA Gene: Jann_1424: Transcriptional regulator of inositol utilization, LacI famil	* Loktanella vestfoldensis SKA53 Site: position = -95 score = 6.73742 sequence = AATTGCAACCGGTTGCAAAA Gene: SKA53_08821: Transcriptional regulator of inositol utilization, LacI famil	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	* Silicibacter TM1040 Site: position = -100 score = 7.12472 sequence = CTTTGCAACCGGTTGCAAAA Gene: TM1040_3344: Transcriptional regulator of inositol utilization, LacI famil	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Transcriptional regulator of inositol utilization, LacI famil

CRON 4.
iolK	Hyphomonas neptunium ATCC 15444	* Jannaschia sp. CCS1 Site: position = -126 score = 7.44503 sequence = TTTTGCAACCGGTTGCAAAA Gene: Jann_1425: Sugar ABC transporter, substrate-binding protein	* Loktanella vestfoldensis SKA53 Site: position = -111 score = 6.73742 sequence = TTTTGCAACCGGTTGCAATT Gene: SKA53_08826: Sugar ABC transporter, substrate-binding protein	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	* Silicibacter TM1040 Site: position = -216 score = 4.94237 sequence = TTCTGCAACCTCTTTCAACG Site: position = -106 score = 7.12472 sequence = TTTTGCAACCGGTTGCAAAG Gene: TM1040_3343: Sugar ABC transporter, substrate-binding protein	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Sugar ABC transporter, substrate-binding protein
iolL	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1426: Sugar ABC transporter, inner membrane protein	Loktanella vestfoldensis SKA53 Gene: SKA53_08831: Sugar ABC transporter, inner membrane protein	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040 Gene: TM1040_3342: Sugar ABC transporter, inner membrane protein	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Sugar ABC transporter, inner membrane protein
iolM	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1427: Sugar ABC transporter, ATP-binding protein	Loktanella vestfoldensis SKA53 Gene: SKA53_08836: Sugar ABC transporter, ATP-binding protein	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040 Gene: TM1040_3341: Sugar ABC transporter, ATP-binding protein	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Sugar ABC transporter, ATP-binding protein
Jann_1428	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1428: Phytanoyl-CoA dioxygenase	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Phytanoyl-CoA dioxygenase
iolB	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1429: 5-deoxy-glucuronate isomerase (EC 5.3.1.-)	Loktanella vestfoldensis SKA53 Gene: SKA53_08841: 5-deoxy-glucuronate isomerase (EC 5.3.1.-)	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	5-deoxy-glucuronate isomerase (EC 5.3.1.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog IolR - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --