Regulon of PaaR in Silicibacter TM1040
| Regulator type: | Transcription factor |
| TF locus tag: | TM1040_0441 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Phenylacetic acid degradation |
| Effector: | Phenylacetyl-CoA |
| Regulog: | PaaR - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 6 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PaaR
- By taxonomy - Rhodobacterales
- By TF family - TetR
- By effector - Phenylacetyl-CoA
- By pathway - Phenylacetic acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -104
Score: 6.7 Sequence: ATAAACCGACCGGACGGTCAAT
Locus tag: TM1040_0437
Name: paaZ Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: TM1040_0436
Name: paaX Funciton: Phenylacetic acid degradation operon negative regulatory protein paaX |
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paaZ
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Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
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paaX
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Phenylacetic acid degradation operon negative regulatory protein paaX
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Position: -78
Score: 6.7 Sequence: ATTGACCGTCCGGTCGGTTTAT
Locus tag: TM1040_0438
Name: paaF Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: TM1040_0439
Name: paaY Funciton: thioesterase superfamily protein
Locus tag: TM1040_0440
Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Locus tag: TM1040_0441
Name: paaR Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family |
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paaF
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Enoyl-CoA hydratase (EC 4.2.1.17)
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paaY
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thioesterase superfamily protein
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paaK
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Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
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paaR
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Transcriptional regulator of phenylacetic acid degradation, TetR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |