Regulon of UxuR in Silicibacter TM1040

Properties
Regulator type:	Transcription factor
TF locus tag:	TM1040_3872
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Glucuronate utilization
Effector:	Glucuronate
Regulog:	UxuR - Rhodobacterales
Statistics of regulated genes:
- Genes	10
- Operons	2
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By trascription factor - ExuR/UxuR
By taxonomy - Rhodobacterales
By TF family - GntR/Others
By effector - Glucuronate
By pathway - Glucuronate utilization

Regulated operons
	Locus Tag	Name	Function
Position: -158 Score: 5.8 Sequence: TAATTGGTCAACCAATTT Position: -95 Score: 4.2 Sequence: GTTTTGGTTGACTGATTG Position: -53 Score: 5.7 Sequence: TTATTGGTTGACCAATAT Locus tag: TM1040_3870 Name: uxuP Funciton: predicted glucuronate TRAP transporter, periplasmic subunit Locus tag: TM1040_3871 Name: uidA Funciton: Beta-glucuronidase precursor (EC 3.2.1.31) Locus tag: TM1040_3872 Name: uxuR Funciton: D-glucuronate repressor, GntR family Locus tag: TM1040_3873 Name: uxuA Funciton: Mannonate dehydratase (EC 4.2.1.8)
	TM1040_3870	uxuP	predicted glucuronate TRAP transporter, periplasmic subunit
	TM1040_3871	uidA	Beta-glucuronidase precursor (EC 3.2.1.31)
	TM1040_3872	uxuR	D-glucuronate repressor, GntR family
	TM1040_3873	uxuA	Mannonate dehydratase (EC 4.2.1.8)
Position: -224 Score: 5.4 Sequence: ATATTGGTCAACCAATAA Position: -119 Score: 6 Sequence: AAATTGGTTGACCAATTA Locus tag: TM1040_3869 Name: uxuQ Funciton: predicted glucuronate TRAP transporter, small subunit Locus tag: TM1040_3868 Name: uxuM Funciton: predicted glucuronate TRAP transporter, large subunit Locus tag: TM1040_3867 Name: lfaA Funciton: Alpha-glucosidase (EC 3.2.1.20) Locus tag: TM1040_3866 Name: uxuB Funciton: D-mannonate oxidoreductase (EC 1.1.1.57) Locus tag: TM1040_3865 Name: uxaC Funciton: Uronate isomerase (EC 5.3.1.12) Locus tag: TM1040_3864 Name: kdgK Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
	TM1040_3869	uxuQ	predicted glucuronate TRAP transporter, small subunit
	TM1040_3868	uxuM	predicted glucuronate TRAP transporter, large subunit
	TM1040_3867	lfaA	Alpha-glucosidase (EC 3.2.1.20)
	TM1040_3866	uxuB	D-mannonate oxidoreductase (EC 1.1.1.57)
	TM1040_3865	uxaC	Uronate isomerase (EC 5.3.1.12)
	TM1040_3864	kdgK	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD