Regulog UxuR - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization |
| Effector: | Glucuronate |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - ExuR/UxuR
- By taxonomy - Rhodobacterales
- By TF family - GntR/Others
- By effector - Glucuronate
- By pathway - Glucuronate utilization
| Genome | Genes | Operons |
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| Rhodobacter sphaeroides 2.4.1 | ||
| Paracoccus denitrificans PD1222 | ||
| Jannaschia sp. CCS1 | ||
| Rhodobacterales bacterium HTCC2654 | ||
| Oceanicola granulosus HTCC2516 | ||
| Loktanella vestfoldensis SKA53 | ||
| Oceanicola batsensis HTCC2597 | ||
| Roseovarius nubinhibens ISM | ||
| Roseovarius sp. 217 | ||
| Sulfitobacter sp. EE-36 | ||
| Silicibacter TM1040 | 10 | 2 |
| Silicibacter pomeroyi DSS-3 | ||
| Roseobacter sp. MED193 | ||
| Hyphomonas neptunium ATCC 15444 | ||
| Oceanicaulis alexandrii HTCC2633 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| uxuP |
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Silicibacter TM1040 Site: position = -53 score = 5.72168 sequence = TTATTGGTTGACCAATAT Site: position = -95 score = 4.19681 sequence = GTTTTGGTTGACTGATTG Site: position = -158 score = 5.77622 sequence = TAATTGGTCAACCAATTT Gene: TM1040_3870: predicted glucuronate TRAP transporter, periplasmic subunit |
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predicted glucuronate TRAP transporter, periplasmic subunit |
| uidA |
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Gene: TM1040_3871: Beta-glucuronidase precursor (EC 3.2.1.31) |
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Beta-glucuronidase precursor (EC 3.2.1.31) |
| uxuR |
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Gene: TM1040_3872: D-glucuronate repressor, GntR family |
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D-glucuronate repressor, GntR family |
| uxuA |
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Gene: TM1040_3873: Mannonate dehydratase (EC 4.2.1.8) |
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Mannonate dehydratase (EC 4.2.1.8) |
| CRON 2. | ||||||||||||||||
| uxuQ |
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Silicibacter TM1040 Site: position = -119 score = 5.95893 sequence = AAATTGGTTGACCAATTA Site: position = -224 score = 5.42163 sequence = ATATTGGTCAACCAATAA Gene: TM1040_3869: predicted glucuronate TRAP transporter, small subunit |
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predicted glucuronate TRAP transporter, small subunit |
| uxuM |
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Gene: TM1040_3868: predicted glucuronate TRAP transporter, large subunit |
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predicted glucuronate TRAP transporter, large subunit |
| lfaA |
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Gene: TM1040_3867: Alpha-glucosidase (EC 3.2.1.20) |
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Alpha-glucosidase (EC 3.2.1.20) |
| uxuB |
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Gene: TM1040_3866: D-mannonate oxidoreductase (EC 1.1.1.57) |
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D-mannonate oxidoreductase (EC 1.1.1.57) |
| uxaC |
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Gene: TM1040_3865: Uronate isomerase (EC 5.3.1.12) |
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Uronate isomerase (EC 5.3.1.12) |
| kdgK |
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Gene: TM1040_3864: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
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2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |