# TF - NrdR: TM1040_2136
>TM1040_1151(nrdJ) Score=4.5 Pos=-204 [Silicibacter TM1040]
CCACAAGATCTAGTTG
# TF - Zur: TM1040_3615
>TM1040_3616(znuA) Score=5.3 Pos=-36 [Silicibacter TM1040]
ATAACGTTATGATATAACACCAG
>TM1040_0201(zinT) Score=5.6 Pos=-36 [Silicibacter TM1040]
AACGTGTTATAACATAACGAATC
>TM1040_0080(yciC) Score=5.4 Pos=-38 [Silicibacter TM1040]
TGATTGTTATCTTATAACATTTC
>TM1040_3615(zur) Score=5.5 Pos=-86 [Silicibacter TM1040]
CTGGTGTTATATCATAACGTTAT
# TF - HutC: TM1040_3001, TM1040_3642
>TM1040_3003(hutF) Score=5.2 Pos=-26 [Silicibacter TM1040]
GTTATGTCTATACATAAG
>TM1040_3642(hutC) Score=5.3 Pos=-119 [Silicibacter TM1040]
AATATGTAGGTACATATT
>TM1040_3004(hutI) Score=5.2 Pos=-67 [Silicibacter TM1040]
CTTATGTATAGACATAAC
# TF - IscR: TM1040_1240
>TM1040_2633(TM1040_2633) Score=4.5 Pos=-116 [Silicibacter TM1040]
TCCGACAAAAATACTAGGG
>TM1040_0347(hmuR) Score=3.9 Pos=-143 [Silicibacter TM1040]
CTTGACAGATTTAATAAAT
>TM1040_1240(iscR) Score=3.9 Pos=-137 [Silicibacter TM1040]
CTTGACGAATTTTATCCGG
>TM1040_2198(hemP) Score=4.7 Pos=-258 [Silicibacter TM1040]
TCTGACCAAATAAATCAGG
>TM1040_2200(bfd) Score=4.1 Pos=-103 [Silicibacter TM1040]
CCTGATCAAAACAGTCCGA
>TM1040_2200(bfd) Score=4.2 Pos=-71 [Silicibacter TM1040]
GCTTATTCTTTTACTCGGA
>TM1040_0122(fbpB) Score=3.7 Pos=-50 [Silicibacter TM1040]
TCCGACAAAAATGCTTGAA
>TM1040_0124(fbpA) Score=5 Pos=-126 [Silicibacter TM1040]
TCTGACTGAATTTATCGGA
# TF - Irr: TM1040_0183
>TM1040_1240(iscR) Score=5.7 Pos=-117 [Silicibacter TM1040]
ACCTTAGAACTGTTCTAAAGA
>TM1040_3091(fssA) Score=5.7 Pos=-74 [Silicibacter TM1040]
AATTTAGAACCATTCCAAAAC
>TM1040_2791(katG) Score=5.7 Pos=-146 [Silicibacter TM1040]
AACTTAGAATAATTCTGAACT
# TF - NagQ: TM1040_3150
>TM1040_3151(nagK) Score=5.7 Pos=-21 [Silicibacter TM1040]
TGGTATCGTAATGGTATT
>TM1040_3152(murQ) Score=-1.8 Pos=-211 [Silicibacter TM1040]
AATACCATTACGATACCA
# TF - NtrC: TM1040_1361
>TM1040_0388(ureD) Score=4.3 Pos=-142 [Silicibacter TM1040]
CGCTTATTTTTTAATCA
>TM1040_1363(nifR3) Score=4.6 Pos=-111 [Silicibacter TM1040]
TGATTAAAAAATAGGCA
>TM1040_1363(nifR3) Score=4.7 Pos=-18 [Silicibacter TM1040]
TGCATAAGGATTAAGCA
>TM1040_2629(glnK) Score=4.3 Pos=-159 [Silicibacter TM1040]
CGCCTAAATAACAAGCA
>TM1040_1023(glnB) Score=4.3 Pos=-146 [Silicibacter TM1040]
TGCCTATTTTTTAACCA
>TM1040_2150(gdhA) Score=4.7 Pos=-112 [Silicibacter TM1040]
TGCCAAAAAATTGTGCA
# TF - Mur: TM1040_0928
>TM1040_0098(sitA) Score=4.5 Pos=-95 [Silicibacter TM1040]
TGTGAGAATAATTCTCATT
>TM1040_0098(sitA) Score=4.7 Pos=-64 [Silicibacter TM1040]
GTTGCGAAGCGTTCTCATA
>TM1040_0183(irr) Score=4.5 Pos=-75 [Silicibacter TM1040]
TTTGCAAATCCGTTTGAAA
# TF - UxuR: TM1040_3872
>TM1040_3870(uxuP) Score=5.7 Pos=-53 [Silicibacter TM1040]
TTATTGGTTGACCAATAT
>TM1040_3870(uxuP) Score=4.2 Pos=-95 [Silicibacter TM1040]
GTTTTGGTTGACTGATTG
>TM1040_3870(uxuP) Score=5.8 Pos=-158 [Silicibacter TM1040]
TAATTGGTCAACCAATTT
>TM1040_3869(uxuQ) Score=6 Pos=-119 [Silicibacter TM1040]
AAATTGGTTGACCAATTA
>TM1040_3869(uxuQ) Score=5.4 Pos=-224 [Silicibacter TM1040]
ATATTGGTCAACCAATAA
# TF - LexA: TM1040_1135
>TM1040_2024(uvrD) Score=0.7 Pos=-57 [Silicibacter TM1040]
GAACGGAGCGTGAAC
>TM1040_1135(lexA) Score=-0.5 Pos=-58 [Silicibacter TM1040]
ACACAAAACGGGAAC
>TM1040_1230(recA) Score=0.5 Pos=-72 [Silicibacter TM1040]
GAACAAGAGGAGAAC
>TM1040_1135(lexA) Score=4.6 Pos=-83 [Silicibacter TM1040]
GTTCCCCTTATGACC
>TM1040_2373(ruvC) Score=5.4 Pos=4 [Silicibacter TM1040]
GTTCGCGTTTTGTGC
>TM1040_1098(uvrA) Score=4.9 Pos=-77 [Silicibacter TM1040]
GTTCCCCCTCTGTTC
>TM1040_1469(PF04055) Score=5.2 Pos=-39 [Silicibacter TM1040]
GTTCTTTATTTGTTC
>TM1040_1230(recA) Score=4.8 Pos=-94 [Silicibacter TM1040]
GTTCTTGTTTTGACC
>TM1040_2122(PF06319) Score=4.7 Pos=-170 [Silicibacter TM1040]
GTTCACTAATTGTTC
# TF - LiuR: TM1040_1556
>TM1040_1556(liuR) Score=5.5 Pos=-98 [Silicibacter TM1040]
AGTTACGTAAACGTCAAG
# TF - RutR: TM1040_1499
>TM1040_1572(cdd) Score=5.8 Pos=-52 [Silicibacter TM1040]
ATTTGACCATCCGATCAAAA
>TM1040_3094(pntD) Score=5.2 Pos=-122 [Silicibacter TM1040]
TTTAGACCGGCTGGTCAAAA
>TM1040_1501(pydX) Score=6.1 Pos=-91 [Silicibacter TM1040]
ATTTTACCAGTTGATAAAAA
>TM1040_1499(rutR) Score=6 Pos=-156 [Silicibacter TM1040]
ATTTGACCAACTGGTCAAAC
>TM1040_0097(deoC) Score=5.4 Pos=-105 [Silicibacter TM1040]
TTTTGTCCTTTTGGTAAAAA
>TM1040_1498(pydC) Score=6.1 Pos=-153 [Silicibacter TM1040]
GTTTGACCAGTTGGTCAAAT
# TF - PhnF: TM1040_3704
>TM1040_3703(phnG) Score=4.5 Pos=-53 [Silicibacter TM1040]
TTGTCTAGTTGTATAGGACA
# TF - PaaR: TM1040_0441
>TM1040_0438(paaF) Score=6.7 Pos=-78 [Silicibacter TM1040]
ATTGACCGTCCGGTCGGTTTAT
>TM1040_0437(paaZ) Score=6.7 Pos=-104 [Silicibacter TM1040]
ATAAACCGACCGGACGGTCAAT
# TF - EutR: TM1040_1386
>TM1040_1386(eutR) Score=5.3 Pos=-49 [Silicibacter TM1040]
CATGTATTAATACAAA
>TM1040_1386(eutR) Score=6.8 Pos=-6 [Silicibacter TM1040]
ATTGTGATGGTACAAT
>TM1040_1386(eutR) Score=6.1 Pos=-78 [Silicibacter TM1040]
TTTGTATTGATGCAAT
# TF - EutR: TM1040_2788
>TM1040_2788(eutR) Score=5.2 Pos=-70 [Silicibacter TM1040]
TCTGTAAAAATTCTTTCATC
>TM1040_2787(eutA) Score=5.2 Pos=-54 [Silicibacter TM1040]
GATGAAAGAATTTTTACAGA
# RNA - mini-ykkC
>TM1040_1959(COG4125) Score=15 Pos=-64 [Silicibacter TM1040]
CGCCGTGCAGGCGTGACCGTTGCCTCGTTATCGGGACGACCCGACC
# RNA - Cobalamin
>TM1040_2222(cbtA) Score=112.8 Pos=-352 [Silicibacter TM1040]
CATTGTCGACGGCATACGGTGTCCCAGAGCGCAAAGCGCCGGGACTGAAACGGGAATGAGGAACGGCGGACCCAATCGCGGCGCCAAAGCCTCAACCGCCCCCGCGACTGTGAGCGGTGAGCGACATTCAGCATCCACTGGCCGCTGGGCCGGGAAGGAGAATGATCGCCGCGACCCGCGAGTCAGGAGACCGGCCGTATGAAACGAGGACAGTGA
>TM1040_2208(cfrX) Score=77.8 Pos=-336 [Silicibacter TM1040]
CGCAAGGAAATTTCGTTGGTTCCCGAAGGTGACAGCCTTTGGGCGAAGAGGGAATGTGTCGGGCCGGGATCATCCTTGCTCCAAACACAGCCGCCCCCGCGACCGTGACCGGAGAGGTCTTCCAACGCCACTGGCGCGCCCCTTGTGGGCAGGCCGGGAAGGCAGGGAGACCGTTCGCGCCCCACTCGGGGCGGATCTATCCGCAAGCCGGGAGACCTGCCAACGCGTGAGAACCGGCGGA
>TM1040_0168(RSP_0787) Score=125.5 Pos=-308 [Silicibacter TM1040]
GCGTAGCATCCAGACAGATGGTTCCTGCCTCTGTTTGGGGTGGGATGAAAAGGGAATACGGTGAGGCTTTGGACCATTGGGTCCCGCCAAGTCCGTGACTGCCCCCGCAACTGTGAGCGGCGAGTTCCCCGGCAAAGCCACTGACCCCAACGTCGTAACCGGCAAAAAAGGGTCGGGAAGGGCCGGTTCGCGATGACCCGCAAGTCAGGAGACCTGCCATCGGCAATGTAAACCTG
>TM1040_2933(cbiW) Score=134.4 Pos=-302 [Silicibacter TM1040]
CGCATGAGAGGGGCGATGGTTCCCCGACGCCTAAGGCCGGTGGGATGAAAAGGGAATTCGGTGCGGAGGAGCCAAAGGGCGCCAAATCCGAAACTGCCCCCGCAACTGTAAGCGGCGAGCGCCCCGTCACAGCCCACTGATCCTCATGGATCGGGAAGGGAGGGACGCGCAATAACCCGCAAGTCAGGAGACCTGCCATCGCGACTTTTTAACCAAG
>TM1040_0521(nrdH) Score=121.7 Pos=-295 [Silicibacter TM1040]
ATCAATATCGTGTTGCTTTGGTTCTTTCGAGGCGACTCGCAAGCGAAGAGGGAAACTGGTGAAAATCCGGTGCTGCCCCCGCAACTGTAAGCGGCAAGCCCTGCCCGTGCCACTGACGCATCGCTGCGTTGGGAAGGCGGGAGGGGGCGTTTGAGCCGCGAAGCCAGGAGACCTGCCAGAGCACGACACACGACG
>TM1040_3219(ardX) Score=106.6 Pos=-338 [Silicibacter TM1040]
ATACAACTCTGCCCTACGAGGTGCTGTCCGGGCTTTCCGGACGGAGAATTGGGAAGCCGGTGCGATTCCGGCGCTGCCCCCGCAACGGTCATGGGATTCGCGGGCGTAACATCTGCCACTGGGAGGAGGACCCGGGAAGGCGTTGCGCTCCGACCAGCAGGTCACCCCCAGAGCCCGGAAACCAGCCTCGGCAGATATCGTCAAC
# RNA - S15
>TM1040_0081(rpsO) Score=15.3 Pos=-63 [Silicibacter TM1040]
GGGCCTGCGCTGGACGACATCCCGGCCTGCGCCATCCACTCTAACCTTATGAAGGAGACCCCGATGTCGATCACTGCAGAAGAAAAAACACGCCTGATGAAAGAATTCGCGACCAAAGAG
# RNA - serC
>TM1040_3020(serC) Score=71.2 Pos=-51 [Silicibacter TM1040]
GGTGGGACACCCCTCCCCAACGAGGGGCGCTTATCTGGAAGGGTAGCATTTAT
# RNA - SAM_alpha
>TM1040_1938(metY) Score=61.6 Pos=-157 [Silicibacter TM1040]
ATCAAGACCCCGTGGCGATTTGTTTACCGGATTGCGGGCCACGTAAAACAAGCCGCTAAAGAGGTCAGGACGACGGGACT
# RNA - TPP
>TM1040_3649(thiD) Score=79.4 Pos=-146 [Silicibacter TM1040]
GCGAACCGTTGGGGTGCCTCCTGGAGGCTGAGAGGCGTGCATGCGCTAACCCATCGAACCTGATCCGGGCAATACCGGCGTAGGGAACGGTCTACTGATGTGCGG
>TM1040_2054(thiC) Score=48.2 Pos=-242 [Silicibacter TM1040]
GCAGCACGCAGGGGAGTCCCAACCCAAGGGGACTGAGAGGCGGACGGGGAGTGATCCCGGTGACGCGACCCTTTGAACCTGACCCAGTTGATACTGGCGGAGGAAGCTAGGACAGTCGCGCACC
>TM1040_2818(thiB) Score=73.3 Pos=-158 [Silicibacter TM1040]
TCGCCCCACCTCGGGGTGCGCGAGCGGTCGTGCTGAGATGCCTATGGGCGAACCCGCTGAACCTGAACCGGATTATACCGGCGTAGGGAAGGTTTGGTATGACAAG
# RNA - FMN
>TM1040_2496(ribN) Score=110.3 Pos=-224 [Silicibacter TM1040]
GATATTCTCAGGGCAGGGTGAAAGTCCCTACCGGTGGTCACAGCCCACGAGCGGCCCTTGGTTTGACAAGGGTGACAGCAGACCCGGCGCAATTCCGGGGCCGACGGTTACAGTCCGGATGAAAGAGAATGGAGAG
>TM1040_3310(ribH2) Score=118.9 Pos=-182 [Silicibacter TM1040]
TTTCCATTCTCAGGGCGGGGTGAAATTCCCCACCGGCGGTTATAGCCCGCGAGCGCCACCTCTACGGGGTGGGTCAGCAGATCCGGTGGAATTCCGGGGCCGACGGTCATAGTCCGGATGGGAGAGAATGTAC
# RNA - Glycine
>TM1040_2393(gcvT) Score=48 Pos=-191 [Silicibacter TM1040]
GCGTAACTACTCTGGAGAGAGCCCGACCAGATCGGGCCGCCGAAGGGATAACGATCTCAGGCGAAGGGACAGAGGGGGCATC
>TM1040_2393(gcvT) Score=42.6 Pos=-293 [Silicibacter TM1040]
GCCGCAGCACATGGGAGAACCGACCAAGAGGCTTGGCGCCTCGCTGATCGGTGCCGAAGGAGCAACCGCCCCGGAAACTCTCAGGCCACAAGGACCGTGTGCG
# RNA - SAM-SAH
>TM1040_0193(metK) Score=61.7 Pos=-56 [Silicibacter TM1040]
TGCCGCCACAACGGCTTCCTGGCGTGGCGGATCTCATCCAATGGAGCACA
# TF - AglR: TM1040_3308
>TM1040_3307(aglE) Score=5.1 Pos=-257 [Silicibacter TM1040]
CCTCCAAAGCGCTTTAAAAA
>TM1040_3307(aglE) Score=6.3 Pos=-102 [Silicibacter TM1040]
CAATCAAAGCGCTTTGAATC
>TM1040_3308(aglR) Score=5.1 Pos=-29 [Silicibacter TM1040]
TTTTTAAAGCGCTTTGGAGG
>TM1040_3308(aglR) Score=6.3 Pos=-184 [Silicibacter TM1040]
GATTCAAAGCGCTTTGATTG
# TF - HrcA: TM1040_2873
>TM1040_0596(groS) Score=7.5 Pos=-94 [Silicibacter TM1040]
TTAGCACTCGACTGAGGTGAGTGCTAA
# TF - SmoR: TM1040_0432
>TM1040_0432(smoR) Score=5.1 Pos=-93 [Silicibacter TM1040]
AAGTTTGCGCCCGCAAAGTT
>TM1040_0431(smoE) Score=5.8 Pos=-89 [Silicibacter TM1040]
TTCTTTACGCGCGTAAATTT
# TF - SoxR: TM1040_3746
>TM1040_3746(soxR) Score=6.1 Pos=-103 [Silicibacter TM1040]
TTCTAAACCTAACTTTAGCT
>TM1040_1863(PF00903) Score=5.8 Pos=-93 [Silicibacter TM1040]
ATCTAAAGTGAGCTTGAGGA
>TM1040_3747(PF00903) Score=6.1 Pos=-62 [Silicibacter TM1040]
AGCTAAAGTTAGGTTTAGAA
# TF - CadR-PbrR: TM1040_2931
>TM1040_2930(czcD) Score=6.3 Pos=-71 [Silicibacter TM1040]
AACCTCTAGTCACTAGAGCAA
# TF - BioR: TM1040_3010
>TM1040_3661(bioM) Score=4.8 Pos=-94 [Silicibacter TM1040]
TTATAGATAA
# TF - IolR: TM1040_3344
>TM1040_3348(iolD) Score=7.1 Pos=-96 [Silicibacter TM1040]
GTTTGCAACCGGTTGCAAAA
>TM1040_3347 Score=7.1 Pos=-47 [Silicibacter TM1040]
TTTTGCAACCGGTTGCAAAC
>TM1040_3344(iolR) Score=7.1 Pos=-100 [Silicibacter TM1040]
CTTTGCAACCGGTTGCAAAA
>TM1040_3343(iolK) Score=4.9 Pos=-216 [Silicibacter TM1040]
TTCTGCAACCTCTTTCAACG
>TM1040_3343(iolK) Score=7.1 Pos=-106 [Silicibacter TM1040]
TTTTGCAACCGGTTGCAAAG
# TF - CceR (GapR): TM1040_3128
>TM1040_0378(pgi) Score=5.5 Pos=-98 [Silicibacter TM1040]
CATTGTTAGCGCTAACTTGG
>TM1040_2516(pykA) Score=4.9 Pos=-114 [Silicibacter TM1040]
AAATGTTTGCGTTAACGGTC
>TM1040_3042(scrK) Score=4.7 Pos=-93 [Silicibacter TM1040]
AAATGTTAGCGCTTTCAGGT
>TM1040_2442(pckA) Score=4 Pos=-198 [Silicibacter TM1040]
TTTTGGTGGCGCTAAAGGTT
>TM1040_2442(pckA) Score=5.1 Pos=-177 [Silicibacter TM1040]
GCTTGGTTGCGCTAACGACC
>TM1040_1111(gapA) Score=4.8 Pos=-150 [Silicibacter TM1040]
AACAGTTACCGCAAACGCCG
>TM1040_1111(gapA) Score=4.3 Pos=-126 [Silicibacter TM1040]
AGGTGTTAACGCCACCATCA
>TM1040_1111(gapA) Score=4.5 Pos=-107 [Silicibacter TM1040]
AAGGTTTTGCGCTAACAGTC
>TM1040_0417(gapB) Score=4.7 Pos=-85 [Silicibacter TM1040]
CTTCGTTAGCGATAACGATA
>TM1040_0417(gapB) Score=4.5 Pos=-60 [Silicibacter TM1040]
GAGTGATAGCGGTACCAGTG
>TM1040_2028(pycA) Score=4.5 Pos=-102 [Silicibacter TM1040]
GCAAGTGAGCGCAATCATGC
>TM1040_2379(tal) Score=5.3 Pos=-129 [Silicibacter TM1040]
CGCTGTTTACGCTAACATGC
>TM1040_0931(eno) Score=4.1 Pos=-214 [Silicibacter TM1040]
AAGGGTGAGCGCTATCATCT
>TM1040_0931(eno) Score=5.1 Pos=-89 [Silicibacter TM1040]
AGCCGTTAGCGGTAACGCTT
>TM1040_1976(fba) Score=5 Pos=-105 [Silicibacter TM1040]
GGGCGTTAGCGCAACCATTG
>TM1040_1112(yedI) Score=4.8 Pos=-124 [Silicibacter TM1040]
CGGCGTTTGCGGTAACTGTT
>TM1040_1112(yedI) Score=4.3 Pos=-148 [Silicibacter TM1040]
TGATGGTGGCGTTAACACCT
>TM1040_1112(yedI) Score=4.5 Pos=-167 [Silicibacter TM1040]
GACTGTTAGCGCAAAACCTT
>TM1040_0378(pgi) Score=3.8 Pos=-130 [Silicibacter TM1040]
GCAAGTTTGCGAAAATTTGG
# TF - Chvl: TM1040_2441
>TM1040_2441(chvI) Score=8.2 Pos=-89 [Silicibacter TM1040]
GATTCG-------------GATTCG
# TF - HypR2: TM1040_3324
>TM1040_3324(hypR2) Score=4.3 Pos=-129 [Silicibacter TM1040]
TATCGGATACATCA
>TM1040_3323(hypS) Score=4.8 Pos=-127 [Silicibacter TM1040]
TTTTGGATACGTTA
>TM1040_3323(hypS) Score=4.3 Pos=-41 [Silicibacter TM1040]
TGATGTATCCGATA
>TM1040_3198(hypD) Score=5.3 Pos=-158 [Silicibacter TM1040]
TTTTGGATACAAAA
>TM1040_3324(hypR2) Score=4.8 Pos=-43 [Silicibacter TM1040]
TAACGTATCCAAAA
>TM1040_3325(hypH) Score=4.8 Pos=-55 [Silicibacter TM1040]
ATATGTATACATTA
# TF - MetR: TM1040_1699
>TM1040_1700(metF) Score=4.9 Pos=-124 [Silicibacter TM1040]
ATGAATTTGATTCAC
>TM1040_3617(metH2) Score=4.6 Pos=-91 [Silicibacter TM1040]
GTGAGGCAAGCTCAT
>TM1040_1699(metR) Score=4.9 Pos=-48 [Silicibacter TM1040]
GTGAATCAAATTCAT
# TF - TauR: TM1040_0156
>TM1040_0155(xsc) Score=8.9 Pos=-115 [Silicibacter TM1040]
CTGGCACTAC------------CTGGCCCTAA
>TM1040_0159 Score=9 Pos=-128 [Silicibacter TM1040]
TTGGACCTAA------------CTGGACCTAT
# TF - FnrN: TM1040_2547
>TM1040_2336(ctaC) Score=5.2 Pos=-164 [Silicibacter TM1040]
TTTTTGATCTAAGTCAAGAA
>TM1040_0860(hemA) Score=5.4 Pos=-169 [Silicibacter TM1040]
TATTTGACCTGTATCAAGGA
>TM1040_2547(fnrN) Score=5.2 Pos=-29 [Silicibacter TM1040]
GCTTTGACACAGATCAACCA
>TM1040_2291(ctaD) Score=5.6 Pos=-125 [Silicibacter TM1040]
TTCTTGATCCAGATCAAACT
>TM1040_2546(uspA) Score=5.4 Pos=-126 [Silicibacter TM1040]
ACATTGATCTGTATCAAGAT
>TM1040_2548(hemN) Score=5.2 Pos=-51 [Silicibacter TM1040]
TGGTTGATCTGTGTCAAAGC
>TM1040_0734(ompW) Score=5.2 Pos=-78 [Silicibacter TM1040]
CATTTGATCTAGATCAGAGC
>TM1040_2545(ccoN) Score=5.4 Pos=-117 [Silicibacter TM1040]
ATCTTGATACAGATCAATGT
>TM1040_2540(ccoG) Score=5.4 Pos=-79 [Silicibacter TM1040]
TTTTTGATCCACGTCAAAGT