Regulon of Irr in Silicibacter TM1040
| Regulator type: | Transcription factor |
| TF locus tag: | TM1040_0183 |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Iron homeostasis |
| Effector: | Heme |
| Regulog: | Irr - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - Irr
- By taxonomy - Rhodobacterales
- By TF family - FUR
- By effector - Heme
- By pathway - Iron homeostasis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -117
Score: 5.7 Sequence: ACCTTAGAACTGTTCTAAAGA
Locus tag: TM1040_1240
Name: iscR Funciton: Iron-sulfur cluster regulator IscR
Locus tag: TM1040_1241
Name: sufS Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: TM1040_1242
Name: sufB Funciton: Iron-sulfur assembly protein SufB
Locus tag: TM1040_1243
Name: PF01906 Funciton: hypothetical protein
Locus tag: TM1040_1244
Name: PF02475 Funciton: Methyltransferase FkbM
Locus tag: TM1040_1245
Name: sufC Funciton: Iron-sulfur cluster assembly ATPase protein SufC
Locus tag: TM1040_1246
Name: sufD Funciton: Iron-sulfur cluster assembly protein SufD
Locus tag: TM1040_1247
Name: PF04893 Funciton: hypothetical protein
Locus tag: TM1040_1248
Name: PF04893 Funciton: hypothetical protein
Locus tag: TM1040_1249
Name: sufS2 Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
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iscR
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Iron-sulfur cluster regulator IscR
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sufS
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Cysteine desulfurase (EC 2.8.1.7)
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sufB
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Iron-sulfur assembly protein SufB
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PF01906
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hypothetical protein
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PF02475
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Methyltransferase FkbM
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sufC
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Iron-sulfur cluster assembly ATPase protein SufC
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sufD
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Iron-sulfur cluster assembly protein SufD
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PF04893
|
hypothetical protein
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PF04893
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hypothetical protein
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sufS2
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Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
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Position: -74
Score: 5.7 Sequence: AATTTAGAACCATTCCAAAAC
Locus tag: TM1040_3091
Name: fssA Funciton: putative nifU-like iron-sulphur cluster scaffold protein |
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fssA
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putative nifU-like iron-sulphur cluster scaffold protein
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Position: -146
Score: 5.7 Sequence: AACTTAGAATAATTCTGAACT
Locus tag: TM1040_2791
Name: katG Funciton: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) |
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katG
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Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |