Regulog Irr - Rhodobacterales

Member of regulog collections
- By trascription factor - Irr
- By taxonomy - Rhodobacterales
- By TF family - FUR
- By effector - Heme
- By pathway - Iron homeostasis
Genome | Genes | Operons |
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Rhodobacter sphaeroides 2.4.1 | 2 | 2 |
Paracoccus denitrificans PD1222 | ||
Jannaschia sp. CCS1 | 14 | 3 |
Rhodobacterales bacterium HTCC2654 | 4 | 3 |
Oceanicola granulosus HTCC2516 | 10 | 1 |
Loktanella vestfoldensis SKA53 | 11 | 4 |
Oceanicola batsensis HTCC2597 | 12 | 3 |
Roseovarius nubinhibens ISM | 16 | 4 |
Roseovarius sp. 217 | 13 | 4 |
Sulfitobacter sp. EE-36 | 13 | 4 |
Silicibacter TM1040 | 12 | 3 |
Silicibacter pomeroyi DSS-3 | 4 | 4 |
Roseobacter sp. MED193 | 12 | 2 |
Hyphomonas neptunium ATCC 15444 | ||
Oceanicaulis alexandrii HTCC2633 |
Genes | Function | |||||||||||||||
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CRON 1. | ||||||||||||||||
iscR |
Gene: RSP_0443: Iron-sulfur cluster regulator IscR |
Gene: Pden_2958: Iron-sulfur cluster regulator IscR |
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Jannaschia sp. CCS1 Site: position = -137 score = 5.18857 sequence = ACCCTAGAACGATTCCAAATT Gene: Jann_2366: Iron-sulfur cluster regulator IscR |
Gene: RB2654_04009: Iron-sulfur cluster regulator IscR |
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Oceanicola granulosus HTCC2516 Site: position = -131 score = 6.318 sequence = TGTTTAGAAGTGTTCTAAACT Gene: OG2516_03700: Iron-sulfur cluster regulator IscR |
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Loktanella vestfoldensis SKA53 Site: position = -111 score = 5.86635 sequence = ACCTTAGAAGGATTCTAAACT Gene: SKA53_05183: Iron-sulfur cluster regulator IscR |
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Oceanicola batsensis HTCC2597 Site: position = -114 score = 5.03496 sequence = ACCTTAGAAAGATTCTAAAGC Gene: OB2597_03589: Iron-sulfur cluster regulator IscR |
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Roseovarius nubinhibens ISM Site: position = -129 score = 6.34207 sequence = ACTTTAGAACTGTTCTAAACA Gene: ISM_16015: Iron-sulfur cluster regulator IscR |
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Roseovarius sp. 217 Site: position = -100 score = 5.96286 sequence = ACCTTAGAACTGTTCTAAATT Gene: ROS217_20542: Iron-sulfur cluster regulator IscR |
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Sulfitobacter sp. EE-36 Site: position = -116 score = 5.90335 sequence = AGTTTAGAACGGTTCTAACTT Gene: EE36_14302: Iron-sulfur cluster regulator IscR |
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Silicibacter TM1040 Site: position = -117 score = 5.69427 sequence = ACCTTAGAACTGTTCTAAAGA Gene: TM1040_1240: Iron-sulfur cluster regulator IscR |
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Silicibacter pomeroyi DSS-3 Site: position = -121 score = 5.24073 sequence = ATCTTAGAATGGTTCTAAGTC Gene: SPO2025: Iron-sulfur cluster regulator IscR |
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Roseobacter sp. MED193 Site: position = -124 score = 5.31165 sequence = ATCTTAGAACAATTCTAATTG Gene: MED193_04321: Iron-sulfur cluster regulator IscR |
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Gene: OA2633_03246: Iron-sulfur cluster regulator IscR |
Iron-sulfur cluster regulator IscR |
sufS |
Gene: RSP_0442: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Pden_3963: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Jann_2365: Cysteine desulfurase (EC 2.8.1.7) |
Gene: RB2654_04004: Cysteine desulfurase (EC 2.8.1.7) |
Gene: OG2516_03695: Cysteine desulfurase (EC 2.8.1.7) |
Gene: SKA53_05178: Cysteine desulfurase (EC 2.8.1.7) |
Gene: OB2597_03584: Cysteine desulfurase (EC 2.8.1.7) |
Gene: ISM_16010: Cysteine desulfurase (EC 2.8.1.7) |
Gene: ROS217_20537: Cysteine desulfurase (EC 2.8.1.7) |
Gene: EE36_14307: Cysteine desulfurase (EC 2.8.1.7) |
Gene: TM1040_1241: Cysteine desulfurase (EC 2.8.1.7) |
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Gene: MED193_04316: Cysteine desulfurase (EC 2.8.1.7) |
Gene: HNE_2620: Cysteine desulfurase (EC 2.8.1.7) |
Gene: OA2633_03241: Cysteine desulfurase (EC 2.8.1.7) |
Cysteine desulfurase (EC 2.8.1.7) |
sufB |
Gene: RSP_0440: Iron-sulfur assembly protein SufB |
Gene: Pden_3964: Iron-sulfur assembly protein SufB |
Gene: Jann_2364: Iron-sulfur assembly protein SufB |
Gene: RB2654_03999: Iron-sulfur assembly protein SufB |
Gene: OG2516_03690: Iron-sulfur assembly protein SufB |
Gene: SKA53_05173: Iron-sulfur assembly protein SufB |
Gene: OB2597_03579: Iron-sulfur assembly protein SufB |
Gene: ISM_16005: Iron-sulfur assembly protein SufB |
Gene: ROS217_20532: Iron-sulfur assembly protein SufB |
Gene: EE36_14312: Iron-sulfur assembly protein SufB |
Gene: TM1040_1242: Iron-sulfur assembly protein SufB |
Gene: SPO2023: Iron-sulfur assembly protein SufB |
Gene: MED193_04311: Iron-sulfur assembly protein SufB |
Gene: HNE_2619: Iron-sulfur assembly protein SufB |
Gene: OA2633_03236: Iron-sulfur assembly protein SufB |
Iron-sulfur assembly protein SufB |
ISM_16000 |
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Gene: ISM_16000: hypothetical protein |
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hypothetical protein |
PF02475 |
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2
Jannaschia sp. CCS1 Gene: Jann_2362: Methyltransferase FkbM Gene: Jann_2360: Methyltransferase FkbM |
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Gene: OG2516_03685: Methyltransferase FkbM |
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Gene: ISM_15995: Methyltransferase FkbM |
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Gene: TM1040_1244: Methyltransferase FkbM |
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Methyltransferase FkbM |
ISM_15990 |
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Gene: ISM_15990: hypothetical protein |
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hypothetical protein |
PF02475 |
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Gene: OG2516_11676: Protein of unknown function Met10 |
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Gene: OB2597_19321: Protein of unknown function Met10 |
Gene: ISM_15985: Protein of unknown function Met10 |
2
Roseovarius sp. 217 Gene: ROS217_06585: Protein of unknown function Met10 Gene: ROS217_13371: Protein of unknown function Met10 |
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Gene: OA2633_06359: Protein of unknown function Met10 |
Protein of unknown function Met10 |
PDB:3cvoA |
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Gene: OG2516_03680: hypothetical protein |
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2
Oceanicola batsensis HTCC2597 Gene: OB2597_03569: hypothetical protein Gene: OB2597_05505: hypothetical protein |
Gene: ISM_15980: hypothetical protein |
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Gene: TM1040_0261: hypothetical protein |
Gene: SPO2022: hypothetical protein |
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hypothetical protein |
sufC |
Gene: RSP_0437: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: Pden_3966: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: Jann_2359: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: RB2654_03994: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: OG2516_03675: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: SKA53_05168: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: OB2597_03564: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: ISM_15975: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: ROS217_20517: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: EE36_14327: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: TM1040_1245: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: SPO2018: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: MED193_04291: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: HNE_2616: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: OA2633_03226: Iron-sulfur cluster assembly ATPase protein SufC |
Iron-sulfur cluster assembly ATPase protein SufC |
sufD |
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Gene: Pden_3967: Iron-sulfur cluster assembly protein SufD |
Gene: Jann_2358: Iron-sulfur cluster assembly protein SufD |
Gene: RB2654_03989: Iron-sulfur cluster assembly protein SufD |
Gene: OG2516_03670: Iron-sulfur cluster assembly protein SufD |
Gene: SKA53_05163: Iron-sulfur cluster assembly protein SufD |
Gene: OB2597_03559: Iron-sulfur cluster assembly protein SufD |
Gene: ISM_15970: Iron-sulfur cluster assembly protein SufD |
Gene: ROS217_20512: Iron-sulfur cluster assembly protein SufD |
Gene: EE36_14332: Iron-sulfur cluster assembly protein SufD |
Gene: TM1040_1246: Iron-sulfur cluster assembly protein SufD |
Gene: SPO2017: Iron-sulfur cluster assembly protein SufD |
Gene: MED193_04286: Iron-sulfur cluster assembly protein SufD |
Gene: HNE_2615: Iron-sulfur cluster assembly protein SufD |
Gene: OA2633_03221: Iron-sulfur cluster assembly protein SufD |
Iron-sulfur cluster assembly protein SufD |
PF04893 |
Gene: RSP_0433: hypothetical protein |
Gene: Pden_3968: hypothetical protein |
Gene: Jann_2357: hypothetical protein |
Gene: RB2654_03984: hypothetical protein |
Gene: OG2516_03665: hypothetical protein |
Gene: SKA53_05158: hypothetical protein |
Gene: OB2597_03554: hypothetical protein |
Gene: ISM_15965: hypothetical protein |
Gene: ROS217_20507: hypothetical protein |
Gene: EE36_14337: hypothetical protein |
Gene: TM1040_1247: hypothetical protein |
Gene: SPO2016: hypothetical protein |
Gene: MED193_04281: hypothetical protein |
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hypothetical protein |
PF04893 |
Gene: RSP_0432: hypothetical protein |
Gene: Pden_3969: hypothetical protein |
Gene: Jann_2356: hypothetical protein |
Gene: RB2654_03979: hypothetical protein |
Gene: OG2516_03660: hypothetical protein |
Gene: SKA53_05153: hypothetical protein |
Gene: OB2597_03549: hypothetical protein |
Gene: ISM_15960: hypothetical protein |
Gene: ROS217_20502: hypothetical protein |
Gene: EE36_14342: hypothetical protein |
Gene: TM1040_1248: hypothetical protein |
Gene: SPO2015: hypothetical protein |
Gene: MED193_04276: hypothetical protein |
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hypothetical protein |
sufS2 |
Gene: RSP_0431: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: Pden_3970: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: Jann_2355: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: RB2654_03974: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: OG2516_03655: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: SKA53_05148: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: OB2597_03544: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: ISM_15955: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: ROS217_20497: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: EE36_14347: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: TM1040_1249: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: SPO2014: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: MED193_04271: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: HNE_2614: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: OA2633_03216: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
TIGR01444 |
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Gene: Jann_2363: Methyltransferase FkbM |
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Gene: SPO2020: Methyltransferase FkbM |
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Methyltransferase FkbM |
PF04230 |
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Gene: Jann_2361: ExoV domain protein |
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Gene: EE36_14322: ExoV domain protein |
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Gene: MED193_04296: ExoV domain protein |
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ExoV domain protein |
MED193_04306 |
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Gene: MED193_04306: hypothetical protein |
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hypothetical protein |
PF01906 |
Gene: RSP_0439: hypothetical protein |
Gene: Pden_3965: hypothetical protein |
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Gene: OB2597_03574: hypothetical protein |
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Gene: ROS217_20527: hypothetical protein |
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Gene: TM1040_1243: hypothetical protein |
Gene: SPO2021: hypothetical protein |
Gene: MED193_04301: hypothetical protein |
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Gene: OA2633_00480: hypothetical protein |
hypothetical protein |
EE36_14317 |
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Gene: EE36_14317: hypothetical protein |
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hypothetical protein |
OG2516_18780 |
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Gene: OG2516_18780: probable glycosyl transferase |
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Gene: ISM_03545: Probable glycosyl transferase |
Gene: ROS217_20522: hypothetical protein |
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probable glycosyl transferase |
CRON 2. | ||||||||||||||||
fssA |
Gene: RSP_2214: putative nifU-like iron-sulphur cluster scaffold protein |
Gene: Pden_0531: putative nifU-like iron-sulphur cluster scaffold protein |
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Jannaschia sp. CCS1 Site: position = -79 score = 4.85083 sequence = ACTTTAGAACGATTCCAGTTC Gene: Jann_0865: putative nifU-like iron-sulphur cluster scaffold protein |
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Rhodobacterales bacterium HTCC2654 Site: position = -52 score = 4.80568 sequence = GACTTGGAACGATTCCAAGCT Gene: RB2654_18613: putative nifU-like iron-sulphur cluster scaffold protein |
Gene: OG2516_07967: putative nifU-like iron-sulphur cluster scaffold protein |
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Loktanella vestfoldensis SKA53 Site: position = -78 score = 5.93031 sequence = AGTTTAGAATCGTTCCAAATC Gene: SKA53_14701: putative nifU-like iron-sulphur cluster scaffold protein |
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Oceanicola batsensis HTCC2597 Site: position = -79 score = 5.2442 sequence = GAATTAGAACGGTTCTAAATC Gene: OB2597_10089: putative nifU-like iron-sulphur cluster scaffold protein |
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Roseovarius nubinhibens ISM Site: position = -77 score = 5.55473 sequence = TTTTTAGAATCGTTCCAAATC Gene: ISM_02850: putative nifU-like iron-sulphur cluster scaffold protein |
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Roseovarius sp. 217 Site: position = -76 score = 5.81444 sequence = ATCTTAGAATGGTTCTAAACC Gene: ROS217_10487: putative nifU-like iron-sulphur cluster scaffold protein |
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Sulfitobacter sp. EE-36 Site: position = -76 score = 5.52203 sequence = AACTTAGAATCGTTCCAAACC Gene: EE36_09510: putative nifU-like iron-sulphur cluster scaffold protein |
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Silicibacter TM1040 Site: position = -74 score = 5.74923 sequence = AATTTAGAACCATTCCAAAAC Gene: TM1040_3091: putative nifU-like iron-sulphur cluster scaffold protein |
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Silicibacter pomeroyi DSS-3 Site: position = -76 score = 5.71341 sequence = TCTTTAGAACCGTTCCAAAGT Gene: SPO0382: putative nifU-like iron-sulphur cluster scaffold protein |
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Roseobacter sp. MED193 Site: position = -75 score = 6.40217 sequence = AATTTAGAATAATTCTAAACC Gene: MED193_10358: putative nifU-like iron-sulphur cluster scaffold protein |
Gene: HNE_0522: putative nifU-like iron-sulphur cluster scaffold protein |
Gene: OA2633_10184: putative nifU-like iron-sulphur cluster scaffold protein |
putative nifU-like iron-sulphur cluster scaffold protein |
CRON 3. | ||||||||||||||||
mbfA |
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Rhodobacter sphaeroides 2.4.1 Site: position = -29 score = 5.85157 sequence = AATTTAGAATGACTCTAAAAA Gene: RSP_0850: membrane-bound ferritin |
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Rhodobacterales bacterium HTCC2654 Site: position = -30 score = 5.96709 sequence = AGTTTGGAATCGTTCCAAACA Gene: RB2654_16991: membrane-bound ferritin |
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Loktanella vestfoldensis SKA53 Site: position = -32 score = 6.12841 sequence = AGATTAGAATCATTCTAAATA Gene: SKA53_14166: membrane-bound ferritin |
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Roseovarius nubinhibens ISM Site: position = -39 score = 5.90265 sequence = AGTTTAGAATCATTCTAATTG Gene: ISM_08740: membrane-bound ferritin |
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Roseovarius sp. 217 Site: position = -30 score = 6.34018 sequence = AGTTTAGAATTATTCTAAAAG Gene: ROS217_11126: membrane-bound ferritin |
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Silicibacter pomeroyi DSS-3 Site: position = -32 score = 5.79759 sequence = ATCTTGGAATCATTCTAAATT Gene: SPO3842: membrane-bound ferritin |
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membrane-bound ferritin |
CRON 4. | ||||||||||||||||
ccpA |
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Rhodobacter sphaeroides 2.4.1 Site: position = -87 score = 4.89959 sequence = AGATTAGAATTGATCTAAGTC Gene: RSP_2395: Cytochrome c551 peroxidase (EC 1.11.1.5) |
Gene: Pden_0893: Cytochrome c551 peroxidase (EC 1.11.1.5) |
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Roseovarius sp. 217 Site: position = -75 score = 5.51004 sequence = GATTTAGAATGGTTCCAAACG Gene: ROS217_11501: Cytochrome c551 peroxidase (EC 1.11.1.5) |
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Silicibacter pomeroyi DSS-3 Site: position = -72 score = 5.26077 sequence = ATGTTAGAATGATTCTAATCG Gene: SPO0330: Cytochrome c551 peroxidase (EC 1.11.1.5) |
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Cytochrome c551 peroxidase (EC 1.11.1.5) |
CRON 5. | ||||||||||||||||
irpA |
Gene: RSP_1548: Iron-regulated protein A precursor |
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Gene: Jann_1368: Iron-regulated protein A precursor |
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Rhodobacterales bacterium HTCC2654 Site: position = -46 score = 5.42956 sequence = TGATTGGAACCATTCCAAATT Gene: RB2654_13154: Iron-regulated protein A precursor |
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Gene: ISM_04365: Iron-regulated protein A precursor |
Gene: ROS217_10107: Iron-regulated protein A precursor |
Gene: EE36_02713: Iron-regulated protein A precursor |
Gene: TM1040_2199: Iron-regulated protein A precursor |
Gene: SPO0086: Iron-regulated protein A precursor |
Gene: MED193_19664: Iron-regulated protein A precursor |
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Iron-regulated protein A precursor |
bfd |
Gene: RSP_1547: Bacterioferritin-associated ferredoxin |
Gene: Pden_0615: Bacterioferritin-associated ferredoxin |
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Gene: RB2654_13144: Bacterioferritin-associated ferredoxin |
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Gene: OB2597_06820: Bacterioferritin-associated ferredoxin |
Gene: ISM_00995: Bacterioferritin-associated ferredoxin |
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Gene: TM1040_2200: Bacterioferritin-associated ferredoxin |
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Gene: MED193_19654: Bacterioferritin-associated ferredoxin |
Gene: HNE_3075: Bacterioferritin-associated ferredoxin |
Gene: OA2633_12430: Bacterioferritin-associated ferredoxin |
Bacterioferritin-associated ferredoxin |
bfr |
2
Rhodobacter sphaeroides 2.4.1 Gene: RSP_3342: Bacterioferritin (cytochrome b1) Gene: RSP_1546: Bacterioferritin (cytochrome b1) |
Gene: Pden_0616: Bacterioferritin (cytochrome b1) |
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Gene: RB2654_13139: Bacterioferritin (cytochrome b1) |
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Oceanicola batsensis HTCC2597 Site: position = -85 score = 6.09245 sequence = TTTTTGGAATAATTCTAAATT Gene: OB2597_06815: Bacterioferritin (cytochrome b1) |
Gene: ISM_00990: Bacterioferritin (cytochrome b1) |
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Gene: TM1040_2201: Bacterioferritin (cytochrome b1) |
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Gene: MED193_19649: Bacterioferritin (cytochrome b1) |
Gene: HNE_3076: Bacterioferritin (cytochrome b1) |
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Bacterioferritin (cytochrome b1) |
CRON 6. | ||||||||||||||||
katG |
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Gene: Jann_1586: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) |
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Loktanella vestfoldensis SKA53 Site: position = -85 score = 4.87829 sequence = ATGTTAGAAGGATTCTAAGCG Gene: SKA53_14466: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) |
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Roseovarius nubinhibens ISM Site: position = -92 score = 4.61939 sequence = CGCTTAGAACGATTCCAAGGC Gene: ISM_16225: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) |
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Sulfitobacter sp. EE-36 Site: position = -111 score = 4.47972 sequence = ctgTTAGAAcAATTCcAgAaa Gene: EE36_11399: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) |
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Silicibacter TM1040 Site: position = -146 score = 5.71905 sequence = AACTTAGAATAATTCTGAACT Gene: TM1040_2791: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) |
Gene: SPOA0061: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) |
Gene: MED193_12153: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) |
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Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) |
CRON 7. | ||||||||||||||||
dps |
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Jannaschia sp. CCS1 Site: position = -123 score = 6.27915 sequence = AGTTTAGAATTATTCTAGACA Gene: Jann_3276: Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) |
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Gene: SKA53_06272: Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) |
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Sulfitobacter sp. EE-36 Site: position = -116 score = 6.25788 sequence = AGTTTAGAATAATTCCAAAAA Gene: EE36_01790: Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) |
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Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |