Regulon of Irr in Loktanella vestfoldensis SKA53
| Regulator type: | Transcription factor |
| TF locus tag: | SKA53_01126 |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Iron homeostasis |
| Effector: | Heme |
| Regulog: | Irr - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - Irr
- By taxonomy - Rhodobacterales
- By TF family - FUR
- By effector - Heme
- By pathway - Iron homeostasis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -111
Score: 5.9 Sequence: ACCTTAGAAGGATTCTAAACT
Locus tag: SKA53_05183
Name: iscR Funciton: Iron-sulfur cluster regulator IscR
Locus tag: SKA53_05178
Name: sufS Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: SKA53_05173
Name: sufB Funciton: Iron-sulfur assembly protein SufB
Locus tag: SKA53_05168
Name: sufC Funciton: Iron-sulfur cluster assembly ATPase protein SufC
Locus tag: SKA53_05163
Name: sufD Funciton: Iron-sulfur cluster assembly protein SufD
Locus tag: SKA53_05158
Name: PF04893 Funciton: hypothetical protein
Locus tag: SKA53_05153
Name: PF04893 Funciton: hypothetical protein
Locus tag: SKA53_05148
Name: sufS2 Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
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iscR
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Iron-sulfur cluster regulator IscR
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sufS
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Cysteine desulfurase (EC 2.8.1.7)
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sufB
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Iron-sulfur assembly protein SufB
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sufC
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Iron-sulfur cluster assembly ATPase protein SufC
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sufD
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Iron-sulfur cluster assembly protein SufD
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PF04893
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hypothetical protein
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PF04893
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hypothetical protein
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sufS2
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Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
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Position: -78
Score: 5.9 Sequence: AGTTTAGAATCGTTCCAAATC
Locus tag: SKA53_14701
Name: fssA Funciton: putative nifU-like iron-sulphur cluster scaffold protein |
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fssA
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putative nifU-like iron-sulphur cluster scaffold protein
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Position: -32
Score: 6.1 Sequence: AGATTAGAATCATTCTAAATA
Locus tag: SKA53_14166
Name: mbfA Funciton: membrane-bound ferritin |
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mbfA
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membrane-bound ferritin
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Position: -85
Score: 4.9 Sequence: ATGTTAGAAGGATTCTAAGCG
Locus tag: SKA53_14466
Name: katG Funciton: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) |
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katG
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Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |