Regulon of RutR in Silicibacter TM1040
| Regulator type: | Transcription factor |
| TF locus tag: | TM1040_1499 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Pyrimidine utilization |
| Effector: | Uracil |
| Regulog: | RutR - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 18 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - RutR
- By taxonomy - Rhodobacterales
- By TF family - TetR
- By effector - Uracil
- By pathway - Pyrimidine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -105
Score: 5.4 Sequence: TTTTGTCCTTTTGGTAAAAA
Locus tag: TM1040_0097
Name: deoC Funciton: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
Locus tag: TM1040_0096
Name: ald Funciton: Aldehyde dehydrogenase (EC 1.2.1.3) |
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deoC
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Deoxyribose-phosphate aldolase (EC 4.1.2.4)
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ald
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Aldehyde dehydrogenase (EC 1.2.1.3)
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Position: -156
Score: 6 Sequence: ATTTGACCAACTGGTCAAAC
Locus tag: TM1040_1499
Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
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rutR
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Transcriptional regulator RutR of pyrimidine catabolism, TetR family
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Position: -52
Score: 5.8 Sequence: ATTTGACCATCCGATCAAAA
Locus tag: TM1040_1572
Name: cdd Funciton: Cytidine deaminase (EC 3.5.4.5)
Locus tag: TM1040_1571
Name: deoA Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: TM1040_1570
Name: deoB Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: TM1040_1569
Name: upp Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9) |
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cdd
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Cytidine deaminase (EC 3.5.4.5)
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deoA
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Thymidine phosphorylase (EC 2.4.2.4)
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deoB
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Phosphopentomutase (EC 5.4.2.7)
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upp
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Uracil phosphoribosyltransferase (EC 2.4.2.9)
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Position: -122
Score: 5.2 Sequence: TTTAGACCGGCTGGTCAAAA
Locus tag: TM1040_3094
Name: pntD Funciton: Predicted nucleoside ABC transporter, substrate-binding protein
Locus tag: TM1040_3095
Name: pntA Funciton: Predicted nucleoside ABC transporter, ATP-binding protein
Locus tag: TM1040_3096
Name: pntB Funciton: Predicted nucleoside ABC transporter, permease protein 1
Locus tag: TM1040_3097
Name: pntC Funciton: Predicted nucleoside ABC transporter, permease protein 2 |
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pntD
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Predicted nucleoside ABC transporter, substrate-binding protein
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pntA
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Predicted nucleoside ABC transporter, ATP-binding protein
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pntB
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Predicted nucleoside ABC transporter, permease protein 1
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pntC
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Predicted nucleoside ABC transporter, permease protein 2
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Position: -91
Score: 6.1 Sequence: ATTTTACCAGTTGATAAAAA
Locus tag: TM1040_1501
Name: pydX Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Locus tag: TM1040_1500
Name: pydA Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) |
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pydX
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Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
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pydA
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Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
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Position: -153
Score: 6.1 Sequence: GTTTGACCAGTTGGTCAAAT
Locus tag: TM1040_1498
Name: pydC Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: TM1040_1497
Name: pydB Funciton: phenylhydantoinase
Locus tag: TM1040_1496
Name: pytA Funciton: Pyrimidine ABC transporter, ATP-binding protein
Locus tag: TM1040_1495
Name: pytB Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: TM1040_1494
Name: pytC Funciton: Pyrimidine ABC transporter, permease protein 2 |
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pydC
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Beta-ureidopropionase (EC 3.5.1.6)
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pydB
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phenylhydantoinase
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pytA
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Pyrimidine ABC transporter, ATP-binding protein
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pytB
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Pyrimidine ABC transporter, permease protein 1
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pytC
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Pyrimidine ABC transporter, permease protein 2
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |