Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RutR in Silicibacter TM1040

Properties
Regulator type: Transcription factor
TF locus tag: TM1040_1499
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Regulog: RutR - Rhodobacterales
Statistics of regulated genes:
- Genes 18
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 62 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -105
Score: 5.4
Sequence: TTTTGTCCTTTTGGTAAAAA
Locus tag: TM1040_0097
Name: deoC
Funciton: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
Locus tag: TM1040_0096
Name: ald
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3)
TM1040_0097
deoC
Deoxyribose-phosphate aldolase (EC 4.1.2.4)
TM1040_0096
ald
Aldehyde dehydrogenase (EC 1.2.1.3)
Position: -156
Score: 6
Sequence: ATTTGACCAACTGGTCAAAC
Locus tag: TM1040_1499
Name: rutR
Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
TM1040_1499
rutR
Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Position: -52
Score: 5.8
Sequence: ATTTGACCATCCGATCAAAA
Locus tag: TM1040_1572
Name: cdd
Funciton: Cytidine deaminase (EC 3.5.4.5)
Locus tag: TM1040_1571
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: TM1040_1570
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: TM1040_1569
Name: upp
Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9)
TM1040_1572
cdd
Cytidine deaminase (EC 3.5.4.5)
TM1040_1571
deoA
Thymidine phosphorylase (EC 2.4.2.4)
TM1040_1570
deoB
Phosphopentomutase (EC 5.4.2.7)
TM1040_1569
upp
Uracil phosphoribosyltransferase (EC 2.4.2.9)
Position: -122
Score: 5.2
Sequence: TTTAGACCGGCTGGTCAAAA
Locus tag: TM1040_3094
Name: pntD
Funciton: Predicted nucleoside ABC transporter, substrate-binding protein
Locus tag: TM1040_3095
Name: pntA
Funciton: Predicted nucleoside ABC transporter, ATP-binding protein
Locus tag: TM1040_3096
Name: pntB
Funciton: Predicted nucleoside ABC transporter, permease protein 1
Locus tag: TM1040_3097
Name: pntC
Funciton: Predicted nucleoside ABC transporter, permease protein 2
TM1040_3094
pntD
Predicted nucleoside ABC transporter, substrate-binding protein
TM1040_3095
pntA
Predicted nucleoside ABC transporter, ATP-binding protein
TM1040_3096
pntB
Predicted nucleoside ABC transporter, permease protein 1
TM1040_3097
pntC
Predicted nucleoside ABC transporter, permease protein 2
Position: -91
Score: 6.1
Sequence: ATTTTACCAGTTGATAAAAA
Locus tag: TM1040_1501
Name: pydX
Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Locus tag: TM1040_1500
Name: pydA
Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
TM1040_1501
pydX
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
TM1040_1500
pydA
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
Position: -153
Score: 6.1
Sequence: GTTTGACCAGTTGGTCAAAT
Locus tag: TM1040_1498
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: TM1040_1497
Name: pydB
Funciton: phenylhydantoinase
Locus tag: TM1040_1496
Name: pytA
Funciton: Pyrimidine ABC transporter, ATP-binding protein
Locus tag: TM1040_1495
Name: pytB
Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: TM1040_1494
Name: pytC
Funciton: Pyrimidine ABC transporter, permease protein 2
TM1040_1498
pydC
Beta-ureidopropionase (EC 3.5.1.6)
TM1040_1497
pydB
phenylhydantoinase
TM1040_1496
pytA
Pyrimidine ABC transporter, ATP-binding protein
TM1040_1495
pytB
Pyrimidine ABC transporter, permease protein 1
TM1040_1494
pytC
Pyrimidine ABC transporter, permease protein 2
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise