Regulog RutR - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Pyrimidine utilization
Effector:	Uracil
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 62 sites [see more]

Member of regulog collections

By trascription factor - RutR
By taxonomy - Rhodobacterales
By TF family - TetR
By effector - Uracil
By pathway - Pyrimidine utilization

Statistics of regulated genes
Genome	Genes	Operons
Rhodobacter sphaeroides 2.4.1	7	4
Paracoccus denitrificans PD1222	3	1
Jannaschia sp. CCS1	24	5
Rhodobacterales bacterium HTCC2654	14	6
Oceanicola granulosus HTCC2516	14	4
Loktanella vestfoldensis SKA53	12	4
Oceanicola batsensis HTCC2597	5	3
Roseovarius nubinhibens ISM	15	4
Roseovarius sp. 217	14	4
Sulfitobacter sp. EE-36	4	3
Silicibacter TM1040	18	6
Silicibacter pomeroyi DSS-3	22	7
Roseobacter sp. MED193	24	8
Hyphomonas neptunium ATCC 15444
Oceanicaulis alexandrii HTCC2633

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
rutR	2 Rhodobacter sphaeroides 2.4.1* Site: position = -80 score = 4.82796 sequence = GTTTGACCGTCCGGTCAGGA Gene: RSP_0186: Transcriptional regulator RutR of pyrimidine catabolism, TetR family Site: position = -36 score = 4.63164 sequence = ACCTGACCAAGCGGTCAATA Site: position = -70 score = 4.82204 sequence = GTTCGACCATCCGGTCAGAT Gene: RSP_0185: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Paracoccus denitrificans PD1222 Gene: Pden_1121: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Jannaschia sp. CCS1 Site: position = -177 score = 5.39751 sequence = TTTTGACCAAACGGTCAAGG Gene: Jann_2710: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Rhodobacterales bacterium HTCC2654 Site: position = -61 score = 4.91001 sequence = CGTTGATCATCTGGTCAAAT Gene: RB2654_07801: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Oceanicola granulosus HTCC2516 Site: position = -92 score = 5.51361 sequence = ATTTGACCAATCGGTTAAAG Gene: OG2516_10906: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Loktanella vestfoldensis SKA53 Site: position = -143 score = 5.97014 sequence = GTTTGACCAGATGGTCAAAA Gene: SKA53_10679: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Oceanicola batsensis HTCC2597 Site: position = -177 score = 5.87308 sequence = TTTTGACCAATCGGTCAAAG Gene: OB2597_04330: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Roseovarius nubinhibens ISM Site: position = -147 score = 5.99256 sequence = ATTTTACCATTTGGTAAAGT Gene: ISM_13625: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Roseovarius sp. 217 Site: position = -58 score = 5.80903 sequence = TTTTTACCATTTGGTAAACT Gene: ROS217_12316: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Sulfitobacter sp. EE-36 Site: position = -128 score = 5.71638 sequence = TTTTTACCATTTGGTAAATC Gene: EE36_09053: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Silicibacter TM1040 Site: position = -156 score = 6.01887 sequence = ATTTGACCAACTGGTCAAAC Gene: TM1040_1499: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Silicibacter pomeroyi DSS-3 Site: position = -119 score = 6.01887 sequence = ATTTGACCAACTGGTCAAAC Gene: SPO1780: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Roseobacter sp. MED193 Site: position = -155 score = 6.01887 sequence = ATTTGACCAACTGGTCAAAC Gene: MED193_05524: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Transcriptional regulator RutR of pyrimidine catabolism, TetR family

CRON 2.
praX	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	* Jannaschia sp. CCS1 Site: position = -57 score = 5.67797 sequence = CCTTGACCGTTTGGTCAAAA Gene: Jann_2709: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
Jann_2708	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_2708: Hypothetical protein	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Hypothetical protein
pydC	* Rhodobacter sphaeroides 2.4.1 Site: position = -121 score = 4.79841 sequence = TATTGACCGCTTGGTCAGGT Site: position = -87 score = 4.82363 sequence = ATCTGACCGGATGGTCGAAC Gene: RSP_0184: Beta-ureidopropionase (EC 3.5.1.6)	* Paracoccus denitrificans PD1222 Site: position = -225 score = 5.14572 sequence = TATTGACTGGTTGATAAAAT Gene: Pden_1113: Beta-ureidopropionase (EC 3.5.1.6)	Jannaschia sp. CCS1 Gene: Jann_2707: Beta-ureidopropionase (EC 3.5.1.6)	* Rhodobacterales bacterium HTCC2654 Site: position = -233 score = 5.7531 sequence = ATTTAACCGAATGGTAAAAA Gene: RB2654_14955: Beta-ureidopropionase (EC 3.5.1.6)	* Oceanicola granulosus HTCC2516 Site: position = -69 score = 5.61779 sequence = CTTTAACCGATTGGTCAAAT Gene: OG2516_10901: Beta-ureidopropionase (EC 3.5.1.6)	* Loktanella vestfoldensis SKA53 Site: position = -39 score = 5.92449 sequence = TTTTGACCATCTGGTCAAAC Gene: SKA53_10674: Beta-ureidopropionase (EC 3.5.1.6)	* Oceanicola batsensis HTCC2597 Site: position = -43 score = 6.02562 sequence = CTTTGACCGATTGGTCAAAA Gene: OB2597_04325: Beta-ureidopropionase (EC 3.5.1.6)	* Roseovarius nubinhibens ISM Site: position = -41 score = 5.88633 sequence = ACTTTACCAAATGGTAAAAT Gene: ISM_13620: Beta-ureidopropionase (EC 3.5.1.6)	* Roseovarius sp. 217 Site: position = -33 score = 5.74021 sequence = AGTTTACCAAATGGTAAAAA Gene: ROS217_12311: Beta-ureidopropionase (EC 3.5.1.6)	* Sulfitobacter sp. EE-36 Site: position = -61 score = 5.75672 sequence = GATTTACCAAATGGTAAAAA Gene: EE36_09058: Beta-ureidopropionase (EC 3.5.1.6)	* Silicibacter TM1040 Site: position = -153 score = 6.08052 sequence = GTTTGACCAGTTGGTCAAAT Gene: TM1040_1498: Beta-ureidopropionase (EC 3.5.1.6)	* Silicibacter pomeroyi DSS-3 Site: position = -64 score = 6.08052 sequence = GTTTGACCAGTTGGTCAAAT Gene: SPO1781: Beta-ureidopropionase (EC 3.5.1.6)	* Roseobacter sp. MED193 Site: position = -119 score = 6.08052 sequence = GTTTGACCAGTTGGTCAAAT Gene: MED193_05519: Beta-ureidopropionase (EC 3.5.1.6)	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Beta-ureidopropionase (EC 3.5.1.6)
Jann_2706	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_2706: hypothetical protein	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	hypothetical protein
pydB	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0183: phenylhydantoinase	Paracoccus denitrificans PD1222 Gene: Pden_1112: phenylhydantoinase	Jannaschia sp. CCS1 Gene: Jann_2705: phenylhydantoinase	Rhodobacterales bacterium HTCC2654 Gene: RB2654_14925: phenylhydantoinase	Oceanicola granulosus HTCC2516 Gene: OG2516_10886: phenylhydantoinase	Loktanella vestfoldensis SKA53 Gene: SKA53_10664: phenylhydantoinase	Oceanicola batsensis HTCC2597 Gene: OB2597_04303: phenylhydantoinase	Roseovarius nubinhibens ISM Gene: ISM_13615: phenylhydantoinase	Roseovarius sp. 217 Gene: ROS217_12306: phenylhydantoinase	Sulfitobacter sp. EE-36 Gene: EE36_09070: phenylhydantoinase	Silicibacter TM1040 Gene: TM1040_1497: phenylhydantoinase	Silicibacter pomeroyi DSS-3 Gene: SPO1783: phenylhydantoinase	Roseobacter sp. MED193 Gene: MED193_05514: phenylhydantoinase	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	phenylhydantoinase
Jann_2704	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_2704: Hypothetical protein	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Hypothetical protein
pytA	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_2703: Pyrimidine ABC transporter, ATP-binding protein	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516 Gene: OG2516_10876: Pyrimidine ABC transporter, ATP-binding protein	Loktanella vestfoldensis SKA53 Gene: SKA53_10659: Pyrimidine ABC transporter, ATP-binding protein	Oceanicola batsensis HTCC2597 Gene: OB2597_04298: Pyrimidine ABC transporter, ATP-binding protein	Roseovarius nubinhibens ISM Gene: ISM_13605: Pyrimidine ABC transporter, ATP-binding protein	Roseovarius sp. 217 Gene: ROS217_12301: Pyrimidine ABC transporter, ATP-binding protein	Sulfitobacter sp. EE-36 Gene: EE36_09075: Pyrimidine ABC transporter, ATP-binding protein	Silicibacter TM1040 Gene: TM1040_1496: Pyrimidine ABC transporter, ATP-binding protein	Silicibacter pomeroyi DSS-3 Gene: SPO1785: Pyrimidine ABC transporter, ATP-binding protein	Roseobacter sp. MED193 Gene: MED193_05509: Pyrimidine ABC transporter, ATP-binding protein	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Pyrimidine ABC transporter, ATP-binding protein
Jann_2702	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_2702: Predicted N-acetyltransferase	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Predicted N-acetyltransferase
pytB	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0181: Pyrimidine ABC transporter, permease protein 1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_2701: Pyrimidine ABC transporter, permease protein 1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_14885: Pyrimidine ABC transporter, permease protein 1	Oceanicola granulosus HTCC2516 Gene: OG2516_10871: Pyrimidine ABC transporter, permease protein 1	Loktanella vestfoldensis SKA53 Gene: SKA53_10654: Pyrimidine ABC transporter, permease protein 1	Oceanicola batsensis HTCC2597 Gene: OB2597_04293: Pyrimidine ABC transporter, permease protein 1	Roseovarius nubinhibens ISM Gene: ISM_13600: Pyrimidine ABC transporter, permease protein 1	Roseovarius sp. 217 Gene: ROS217_12296: Pyrimidine ABC transporter, permease protein 1	Sulfitobacter sp. EE-36 Gene: EE36_09080: Pyrimidine ABC transporter, permease protein 1	Silicibacter TM1040 Gene: TM1040_1495: Pyrimidine ABC transporter, permease protein 1	Silicibacter pomeroyi DSS-3 Gene: SPO1786: Pyrimidine ABC transporter, permease protein 1	Roseobacter sp. MED193 Gene: MED193_05499: Pyrimidine ABC transporter, permease protein 1	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Pyrimidine ABC transporter, permease protein 1
pytC	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0180: Pyrimidine ABC transporter, permease protein 2	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_2700: Pyrimidine ABC transporter, permease protein 2	Rhodobacterales bacterium HTCC2654 Gene: RB2654_14880: Pyrimidine ABC transporter, permease protein 2	Oceanicola granulosus HTCC2516 Gene: OG2516_10866: Pyrimidine ABC transporter, permease protein 2	Loktanella vestfoldensis SKA53 Gene: SKA53_10649: Pyrimidine ABC transporter, permease protein 2	Oceanicola batsensis HTCC2597 Gene: OB2597_04288: Pyrimidine ABC transporter, permease protein 2	Roseovarius nubinhibens ISM Gene: ISM_13595: Pyrimidine ABC transporter, permease protein 2	Roseovarius sp. 217 Gene: ROS217_12291: Pyrimidine ABC transporter, permease protein 2	Sulfitobacter sp. EE-36 Gene: EE36_09085: Pyrimidine ABC transporter, permease protein 2	Silicibacter TM1040 Gene: TM1040_1494: Pyrimidine ABC transporter, permease protein 2	Silicibacter pomeroyi DSS-3 Gene: SPO1787: Pyrimidine ABC transporter, permease protein 2	Roseobacter sp. MED193 Gene: MED193_05489: Pyrimidine ABC transporter, permease protein 2	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Pyrimidine ABC transporter, permease protein 2
pytD	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0179: Pyrimidine ABC transporter, substrate-binding protein	Paracoccus denitrificans PD1222 Gene: Pden_4039: Pyrimidine ABC transporter, substrate-binding protein	Jannaschia sp. CCS1 Gene: Jann_2699: Pyrimidine ABC transporter, substrate-binding protein	Rhodobacterales bacterium HTCC2654 Gene: RB2654_14870: Pyrimidine ABC transporter, substrate-binding protein	Oceanicola granulosus HTCC2516 Gene: OG2516_10861: Pyrimidine ABC transporter, substrate-binding protein	Loktanella vestfoldensis SKA53 Gene: SKA53_10644: Pyrimidine ABC transporter, substrate-binding protein	Oceanicola batsensis HTCC2597 Gene: OB2597_04283: Pyrimidine ABC transporter, substrate-binding protein	Roseovarius nubinhibens ISM Gene: ISM_13590: Pyrimidine ABC transporter, substrate-binding protein	Roseovarius sp. 217 Gene: ROS217_12286: Pyrimidine ABC transporter, substrate-binding protein	Sulfitobacter sp. EE-36 Gene: EE36_09090: Pyrimidine ABC transporter, substrate-binding protein	Silicibacter TM1040 Gene: TM1040_1493: Pyrimidine ABC transporter, substrate-binding protein	Silicibacter pomeroyi DSS-3 Gene: SPO1788: Pyrimidine ABC transporter, substrate-binding protein	* Roseobacter sp. MED193 Site: position = -60 score = 5.14316 sequence = ATTTGATCGAAGGGTCAAAT Gene: MED193_05484: Pyrimidine ABC transporter, substrate-binding protein	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Pyrimidine ABC transporter, substrate-binding protein
OG2516_10896	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516 Gene: OG2516_10896: Hypothetical protein	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Hypothetical protein
OG2516_10891	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516 Gene: OG2516_10891: N-carbamoyl-L-amino acid amidohydrolase	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	N-carbamoyl-L-amino acid amidohydrolase
RSP_1242	Rhodobacter sphaeroides 2.4.1 Gene: RSP_1242: Predicted lyase	Paracoccus denitrificans PD1222 Gene: Pden_3947: Predicted lyase	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_14915: Predicted lyase	Oceanicola granulosus HTCC2516 Gene: OG2516_10881: Predicted lyase	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597 Gene: OB2597_01147: Predicted lyase	Roseovarius nubinhibens ISM Gene: ISM_13610: Predicted lyase	Roseovarius sp. 217 Gene: ROS217_21982: Predicted lyase	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Predicted lyase
SKA53_10669	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53 Gene: SKA53_10669: Hypothetical protein	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Hypothetical protein
MED193_05504	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193 Gene: MED193_05504: Hypothetical protein	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Hypothetical protein
MED193_05494	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193 Gene: MED193_05494: Hypothetical protein	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Hypothetical protein
pydP	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_1111: Pyrimidine permease in reductive pathway	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Pyrimidine permease in reductive pathway
RB2654_14945	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO1782: Hypothetical protein	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Hypothetical protein

CRON 3.
pydX	* Rhodobacter sphaeroides 2.4.1 Site: position = -74 score = 5.38228 sequence = TATTTATCGTTTGGTAAAAA Gene: RSP_0189: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	Paracoccus denitrificans PD1222	* Jannaschia sp. CCS1 Site: position = -76 score = 5.76894 sequence = ATTTTACCATTTGATAAATT Gene: Jann_2713: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	2 Rhodobacterales bacterium HTCC2654* Site: position = -337 score = 6.14879 sequence = TTTTTACCAATTGATAAAAA Gene: RB2654_14990: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism Gene: RB2654_14980: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	* Oceanicola granulosus HTCC2516 Site: position = -62 score = 6.02039 sequence = ATTTTACCGTTTGATAAAAT Gene: OG2516_10926: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	* Loktanella vestfoldensis SKA53 Site: position = -67 score = 5.76987 sequence = AATTTACCGTTTGATAAAAA Gene: SKA53_10689: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	* Oceanicola batsensis HTCC2597 Site: position = -66 score = 5.92024 sequence = AATTTACCATTTGATAAAAA Gene: OB2597_04355: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	* Roseovarius nubinhibens ISM Site: position = -75 score = 6.19266 sequence = ATTTTACCAATTGATAAAAT Gene: ISM_13640: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	* Roseovarius sp. 217 Site: position = -69 score = 6.19266 sequence = ATTTTACCAATTGATAAAAT Gene: ROS217_06720: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	* Sulfitobacter sp. EE-36 Site: position = -72 score = 6.10778 sequence = ATTTTACCAGTTGATAAAAA Gene: EE36_09043: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	* Silicibacter TM1040 Site: position = -91 score = 6.10778 sequence = ATTTTACCAGTTGATAAAAA Gene: TM1040_1501: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	* Silicibacter pomeroyi DSS-3 Site: position = -89 score = 5.12353 sequence = TTTTGACCGAAAGATAAATT Site: position = -72 score = 6.07918 sequence = ATTTTACCAGTTGATAAAAT Gene: SPO1776: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	* Roseobacter sp. MED193 Site: position = -74 score = 6.10778 sequence = ATTTTACCAGTTGATAAAAA Gene: MED193_05534: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
OB2597_04350	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597 Gene: OB2597_04350: Hypothetical protein	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Hypothetical protein
pydA	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0187: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_2712: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_14975: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Oceanicola granulosus HTCC2516 Gene: OG2516_10921: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Loktanella vestfoldensis SKA53 Gene: SKA53_10684: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Oceanicola batsensis HTCC2597 Gene: OB2597_04345: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Roseovarius nubinhibens ISM Gene: ISM_13635: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Roseovarius sp. 217 Gene: ROS217_06715: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Sulfitobacter sp. EE-36 Gene: EE36_09048: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Silicibacter TM1040 Gene: TM1040_1500: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Silicibacter pomeroyi DSS-3 Gene: SPO1777: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Roseobacter sp. MED193 Gene: MED193_05529: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
RSP_0188	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0188: DedA family integral membrane protein	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	DedA family integral membrane protein

CRON 4.
deoC	Rhodobacter sphaeroides 2.4.1 Gene: RSP_3739: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Paracoccus denitrificans PD1222 Gene: Pden_3897: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	* Jannaschia sp. CCS1 Site: position = -65 score = 5.56797 sequence = TTTTGACCGTTTGGTCAACC Gene: Jann_0789: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	* Rhodobacterales bacterium HTCC2654 Site: position = -26 score = 5.43309 sequence = ATTTGACCAAAAGGAAAAAT Gene: RB2654_10383: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	* Oceanicola granulosus HTCC2516 Site: position = -75 score = 5.88201 sequence = TTTTTACCGGTTGGTCAAAC Gene: OG2516_07892: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	* Loktanella vestfoldensis SKA53 Site: position = -59 score = 6.22261 sequence = GTTTGACCAATTGGTCAAAA Gene: SKA53_09929: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Oceanicola batsensis HTCC2597 Gene: OB2597_13563: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36 Gene: EE36_05768: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	* Silicibacter TM1040 Site: position = -105 score = 5.41785 sequence = TTTTGTCCTTTTGGTAAAAA Gene: TM1040_0097: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	* Silicibacter pomeroyi DSS-3 Site: position = -262 score = 5.25908 sequence = TTTTGTCCGAAAGGTAAAAT Gene: SPO3367: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	* Roseobacter sp. MED193 Site: position = -105 score = 5.48769 sequence = ATTTGTCCAAAAGGTCAAAT Gene: MED193_12973: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Deoxyribose-phosphate aldolase (EC 4.1.2.4)
Jann_0788	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_0788: Hypothetical protein	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Hypothetical protein
Jann_0787	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_0787: Hypothetical protein	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Hypothetical protein
ald	Rhodobacter sphaeroides 2.4.1 Gene: RSP_3740: Aldehyde dehydrogenase (EC 1.2.1.3)	Paracoccus denitrificans PD1222 Gene: Pden_3898: Aldehyde dehydrogenase (EC 1.2.1.3)	Jannaschia sp. CCS1 Gene: Jann_0786: Aldehyde dehydrogenase (EC 1.2.1.3)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_10378: Aldehyde dehydrogenase (EC 1.2.1.3)	Oceanicola granulosus HTCC2516 Gene: OG2516_07897: Aldehyde dehydrogenase (EC 1.2.1.3)	Loktanella vestfoldensis SKA53 Gene: SKA53_09934: Aldehyde dehydrogenase (EC 1.2.1.3)	Oceanicola batsensis HTCC2597 Gene: OB2597_13558: Aldehyde dehydrogenase (EC 1.2.1.3)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36 Gene: EE36_05773: Aldehyde dehydrogenase (EC 1.2.1.3)	Silicibacter TM1040 Gene: TM1040_0096: Aldehyde dehydrogenase (EC 1.2.1.3)	Silicibacter pomeroyi DSS-3 Gene: SPO3368: Aldehyde dehydrogenase (EC 1.2.1.3)	Roseobacter sp. MED193 Gene: MED193_12978: Aldehyde dehydrogenase (EC 1.2.1.3)	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Aldehyde dehydrogenase (EC 1.2.1.3)

CRON 5.
codA	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0341: Cytosine deaminase (EC 3.5.4.1)	Paracoccus denitrificans PD1222	* Jannaschia sp. CCS1 Site: position = -36 score = 5.45752 sequence = ATTTTACCATATGGTAAGGA Gene: Jann_1306: Cytosine deaminase (EC 3.5.4.1)	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM Gene: ISM_11230: Cytosine deaminase (EC 3.5.4.1)	Roseovarius sp. 217 Gene: ROS217_10957: Cytosine deaminase (EC 3.5.4.1)	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO2806: Cytosine deaminase (EC 3.5.4.1)	Roseobacter sp. MED193 Gene: MED193_17224: Cytosine deaminase (EC 3.5.4.1)	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Cytosine deaminase (EC 3.5.4.1)
pytM	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0345: Predicted pyrimidine ABC transporter, substrate-binding protein	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_1305: Predicted pyrimidine ABC transporter, substrate-binding protein	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	* Roseovarius nubinhibens ISM Site: position = -53 score = 5.78057 sequence = TCTTTACCGTTTGGTAAAAT Gene: ISM_11210: Predicted pyrimidine ABC transporter, substrate-binding protein	* Roseovarius sp. 217 Site: position = -44 score = 6.21258 sequence = ATTTTACCAATTGGTAAAAC Gene: ROS217_10977: Predicted pyrimidine ABC transporter, substrate-binding protein	Sulfitobacter sp. EE-36	Silicibacter TM1040	* Silicibacter pomeroyi DSS-3 Site: position = 11 score = 4.96185 sequence = AATTGACTGCTCGGTAAAAA Gene: SPO2802: Predicted pyrimidine ABC transporter, substrate-binding protein	* Roseobacter sp. MED193 Site: position = 74 score = 4.99615 sequence = TTTTTACCCTTTGGACAAGA Gene: MED193_17244: Predicted pyrimidine ABC transporter, substrate-binding protein	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Predicted pyrimidine ABC transporter, substrate-binding protein
amiC	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_1304: Predicted amidase	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Predicted amidase
pytN	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0344: Predicted pyrimidine ABC transporter, ATP-binding protein	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_1303: Predicted pyrimidine ABC transporter, ATP-binding protein	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM Gene: ISM_11215: Predicted pyrimidine ABC transporter, ATP-binding protein	Roseovarius sp. 217 Gene: ROS217_10972: Predicted pyrimidine ABC transporter, ATP-binding protein	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO2803: Predicted pyrimidine ABC transporter, ATP-binding protein	Roseobacter sp. MED193 Gene: MED193_17239: Predicted pyrimidine ABC transporter, ATP-binding protein	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Predicted pyrimidine ABC transporter, ATP-binding protein
pytO	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0343: Predicted pyrimidine ABC transporter, permease protein 1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_1302: Predicted pyrimidine ABC transporter, permease protein 1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM Gene: ISM_11220: Predicted pyrimidine ABC transporter, permease protein 1	Roseovarius sp. 217 Gene: ROS217_10967: Predicted pyrimidine ABC transporter, permease protein 1	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO2804: Predicted pyrimidine ABC transporter, permease protein 1	Roseobacter sp. MED193 Gene: MED193_17234: Predicted pyrimidine ABC transporter, permease protein 1	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Predicted pyrimidine ABC transporter, permease protein 1
pytQ	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0342: Predicted pyrimidine ABC transporter, permease protein 2	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_1301: Predicted pyrimidine ABC transporter, permease protein 2	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM Gene: ISM_11225: Predicted pyrimidine ABC transporter, permease protein 2	Roseovarius sp. 217 Gene: ROS217_10962: Predicted pyrimidine ABC transporter, permease protein 2	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO2805: Predicted pyrimidine ABC transporter, permease protein 2	Roseobacter sp. MED193 Gene: MED193_17229: Predicted pyrimidine ABC transporter, permease protein 2	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Predicted pyrimidine ABC transporter, permease protein 2

CRON 6.
cdd	Rhodobacter sphaeroides 2.4.1 Gene: RSP_1594: Cytidine deaminase (EC 3.5.4.5)	Paracoccus denitrificans PD1222 Gene: Pden_2223: Cytidine deaminase (EC 3.5.4.5)	Jannaschia sp. CCS1 Gene: Jann_2987: Cytidine deaminase (EC 3.5.4.5)	* Rhodobacterales bacterium HTCC2654 Site: position = -29 score = 5.04047 sequence = ACTGGACCATACGGTCAAAG Gene: RB2654_20823: Cytidine deaminase (EC 3.5.4.5)	Oceanicola granulosus HTCC2516 Gene: OG2516_13469: Cytidine deaminase (EC 3.5.4.5)	Loktanella vestfoldensis SKA53 Gene: SKA53_09379: Cytidine deaminase (EC 3.5.4.5)	Oceanicola batsensis HTCC2597 Gene: OB2597_06345: Cytidine deaminase (EC 3.5.4.5)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36 Gene: EE36_03708: Cytidine deaminase (EC 3.5.4.5)	* Silicibacter TM1040 Site: position = -52 score = 5.78603 sequence = ATTTGACCATCCGATCAAAA Gene: TM1040_1572: Cytidine deaminase (EC 3.5.4.5)	* Silicibacter pomeroyi DSS-3 Site: position = -34 score = 5.09406 sequence = TTCCGACCAGATGATCAAAA Gene: SPO2930: Cytidine deaminase (EC 3.5.4.5)	Roseobacter sp. MED193 Gene: MED193_06044: Cytidine deaminase (EC 3.5.4.5)	Hyphomonas neptunium ATCC 15444 Gene: HNE_1295: Cytidine deaminase (EC 3.5.4.5)	Oceanicaulis alexandrii HTCC2633	Cytidine deaminase (EC 3.5.4.5)
deoA	Rhodobacter sphaeroides 2.4.1 Gene: RSP_1595: Thymidine phosphorylase (EC 2.4.2.4)	Paracoccus denitrificans PD1222 Gene: Pden_2222: Thymidine phosphorylase (EC 2.4.2.4)	Jannaschia sp. CCS1 Gene: Jann_2986: Thymidine phosphorylase (EC 2.4.2.4)	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516 Gene: OG2516_13474: Thymidine phosphorylase (EC 2.4.2.4)	Loktanella vestfoldensis SKA53 Gene: SKA53_09374: Thymidine phosphorylase (EC 2.4.2.4)	Oceanicola batsensis HTCC2597 Gene: OB2597_06340: Thymidine phosphorylase (EC 2.4.2.4)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36 Gene: EE36_03703: Thymidine phosphorylase (EC 2.4.2.4)	Silicibacter TM1040 Gene: TM1040_1571: Thymidine phosphorylase (EC 2.4.2.4)	Silicibacter pomeroyi DSS-3 Gene: SPO2929: Thymidine phosphorylase (EC 2.4.2.4)	Roseobacter sp. MED193 Gene: MED193_06039: Thymidine phosphorylase (EC 2.4.2.4)	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Thymidine phosphorylase (EC 2.4.2.4)
deoB	Rhodobacter sphaeroides 2.4.1 Gene: RSP_1596: Phosphopentomutase (EC 5.4.2.7)	Paracoccus denitrificans PD1222 Gene: Pden_2221: Phosphopentomutase (EC 5.4.2.7)	Jannaschia sp. CCS1 Gene: Jann_2985: Phosphopentomutase (EC 5.4.2.7)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_20828: Phosphopentomutase (EC 5.4.2.7)	Oceanicola granulosus HTCC2516 Gene: OG2516_13479: Phosphopentomutase (EC 5.4.2.7)	Loktanella vestfoldensis SKA53 Gene: SKA53_09369: Phosphopentomutase (EC 5.4.2.7)	Oceanicola batsensis HTCC2597 Gene: OB2597_06335: Phosphopentomutase (EC 5.4.2.7)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36 Gene: EE36_03698: Phosphopentomutase (EC 5.4.2.7)	Silicibacter TM1040 Gene: TM1040_1570: Phosphopentomutase (EC 5.4.2.7)	Silicibacter pomeroyi DSS-3 Gene: SPO2928: Phosphopentomutase (EC 5.4.2.7)	Roseobacter sp. MED193 Gene: MED193_06034: Phosphopentomutase (EC 5.4.2.7)	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Phosphopentomutase (EC 5.4.2.7)
add	Rhodobacter sphaeroides 2.4.1 Gene: RSP_1597: Adenosine deaminase (EC 3.5.4.4)	Paracoccus denitrificans PD1222 Gene: Pden_2220: Adenosine deaminase (EC 3.5.4.4)	Jannaschia sp. CCS1 Gene: Jann_2984: Adenosine deaminase (EC 3.5.4.4)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_20833: Adenosine deaminase (EC 3.5.4.4)	Oceanicola granulosus HTCC2516 Gene: OG2516_13484: Adenosine deaminase (EC 3.5.4.4)	Loktanella vestfoldensis SKA53 Gene: SKA53_09364: Adenosine deaminase (EC 3.5.4.4)	Oceanicola batsensis HTCC2597 Gene: OB2597_06330: Adenosine deaminase (EC 3.5.4.4)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO2927: Adenosine deaminase (EC 3.5.4.4)	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Adenosine deaminase (EC 3.5.4.4)
upp	Rhodobacter sphaeroides 2.4.1 Gene: RSP_1598: Uracil phosphoribosyltransferase (EC 2.4.2.9)	Paracoccus denitrificans PD1222 Gene: Pden_2219: Uracil phosphoribosyltransferase (EC 2.4.2.9)	Jannaschia sp. CCS1 Gene: Jann_2983: Uracil phosphoribosyltransferase (EC 2.4.2.9)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_20838: Uracil phosphoribosyltransferase (EC 2.4.2.9)	Oceanicola granulosus HTCC2516 Gene: OG2516_13489: Uracil phosphoribosyltransferase (EC 2.4.2.9)	Loktanella vestfoldensis SKA53 Gene: SKA53_09359: Uracil phosphoribosyltransferase (EC 2.4.2.9)	Oceanicola batsensis HTCC2597 Gene: OB2597_06325: Uracil phosphoribosyltransferase (EC 2.4.2.9)	Roseovarius nubinhibens ISM Gene: ISM_09591: Uracil phosphoribosyltransferase (EC 2.4.2.9)	Roseovarius sp. 217 Gene: ROS217_16770: Uracil phosphoribosyltransferase (EC 2.4.2.9)	Sulfitobacter sp. EE-36 Gene: EE36_03693: Uracil phosphoribosyltransferase (EC 2.4.2.9)	Silicibacter TM1040 Gene: TM1040_1569: Uracil phosphoribosyltransferase (EC 2.4.2.9)	Silicibacter pomeroyi DSS-3 Gene: SPO2926: Uracil phosphoribosyltransferase (EC 2.4.2.9)	* Roseobacter sp. MED193 Site: position = -97 score = 5.40669 sequence = CTTTGACCATCAGATCAAAA Gene: MED193_06029: Uracil phosphoribosyltransferase (EC 2.4.2.9)	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Uracil phosphoribosyltransferase (EC 2.4.2.9)

CRON 7.
pntD	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2211: Predicted nucleoside ABC transporter, substrate-binding protein	Paracoccus denitrificans PD1222 Gene: Pden_0528: Predicted nucleoside ABC transporter, substrate-binding protein	Jannaschia sp. CCS1 Gene: Jann_0861: Predicted nucleoside ABC transporter, substrate-binding protein	* Rhodobacterales bacterium HTCC2654 Site: position = -186 score = 4.77753 sequence = TTTTGAACGTCGGGTCAAAT Gene: RB2654_20923: Predicted nucleoside ABC transporter, substrate-binding protein	Oceanicola granulosus HTCC2516 Gene: OG2516_07982: Predicted nucleoside ABC transporter, substrate-binding protein	Loktanella vestfoldensis SKA53 Gene: SKA53_14686: Predicted nucleoside ABC transporter, substrate-binding protein	Oceanicola batsensis HTCC2597 Gene: OB2597_10104: Predicted nucleoside ABC transporter, substrate-binding protein	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36 Gene: EE36_09495: Predicted nucleoside ABC transporter, substrate-binding protein	* Silicibacter TM1040 Site: position = -122 score = 5.2166 sequence = TTTAGACCGGCTGGTCAAAA Gene: TM1040_3094: Predicted nucleoside ABC transporter, substrate-binding protein	* Silicibacter pomeroyi DSS-3 Site: position = -142 score = 5.13023 sequence = CTCGGACCATTCGGTCAAAA Gene: SPO0379: Predicted nucleoside ABC transporter, substrate-binding protein	* Roseobacter sp. MED193 Site: position = -154 score = 4.74924 sequence = TTCGCACCAAACGGTCAAAA Gene: MED193_10378: Predicted nucleoside ABC transporter, substrate-binding protein	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Predicted nucleoside ABC transporter, substrate-binding protein
OG2516_07987	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516 Gene: OG2516_07987: Conserved hypothetical protein	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193 Gene: MED193_10383: Conserved hypothetical protein	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Conserved hypothetical protein
pntA	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2210: Predicted nucleoside ABC transporter, ATP-binding protein	Paracoccus denitrificans PD1222 Gene: Pden_0527: Predicted nucleoside ABC transporter, ATP-binding protein	Jannaschia sp. CCS1 Gene: Jann_0860: Predicted nucleoside ABC transporter, ATP-binding protein	Rhodobacterales bacterium HTCC2654 Gene: RB2654_20928: Predicted nucleoside ABC transporter, ATP-binding protein	Oceanicola granulosus HTCC2516 Gene: OG2516_07992: Predicted nucleoside ABC transporter, ATP-binding protein	Loktanella vestfoldensis SKA53 Gene: SKA53_14681: Predicted nucleoside ABC transporter, ATP-binding protein	Oceanicola batsensis HTCC2597 Gene: OB2597_10109: Predicted nucleoside ABC transporter, ATP-binding protein	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36 Gene: EE36_09490: Predicted nucleoside ABC transporter, ATP-binding protein	Silicibacter TM1040 Gene: TM1040_3095: Predicted nucleoside ABC transporter, ATP-binding protein	Silicibacter pomeroyi DSS-3 Gene: SPO0378: Predicted nucleoside ABC transporter, ATP-binding protein	Roseobacter sp. MED193 Gene: MED193_10388: Predicted nucleoside ABC transporter, ATP-binding protein	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Predicted nucleoside ABC transporter, ATP-binding protein
pntB	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2209: Predicted nucleoside ABC transporter, permease protein 1	Paracoccus denitrificans PD1222 Gene: Pden_0526: Predicted nucleoside ABC transporter, permease protein 1	Jannaschia sp. CCS1 Gene: Jann_0859: Predicted nucleoside ABC transporter, permease protein 1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_20933: Predicted nucleoside ABC transporter, permease protein 1	Oceanicola granulosus HTCC2516 Gene: OG2516_07997: Predicted nucleoside ABC transporter, permease protein 1	Loktanella vestfoldensis SKA53 Gene: SKA53_14676: Predicted nucleoside ABC transporter, permease protein 1	Oceanicola batsensis HTCC2597 Gene: OB2597_10114: Predicted nucleoside ABC transporter, permease protein 1	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36 Gene: EE36_09485: Predicted nucleoside ABC transporter, permease protein 1	Silicibacter TM1040 Gene: TM1040_3096: Predicted nucleoside ABC transporter, permease protein 1	Silicibacter pomeroyi DSS-3 Gene: SPO0377: Predicted nucleoside ABC transporter, permease protein 1	Roseobacter sp. MED193 Gene: MED193_10393: Predicted nucleoside ABC transporter, permease protein 1	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Predicted nucleoside ABC transporter, permease protein 1
pntC	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2208: Predicted nucleoside ABC transporter, permease protein 2	Paracoccus denitrificans PD1222 Gene: Pden_0525: Predicted nucleoside ABC transporter, permease protein 2	Jannaschia sp. CCS1 Gene: Jann_0856: Predicted nucleoside ABC transporter, permease protein 2	Rhodobacterales bacterium HTCC2654 Gene: RB2654_20938: Predicted nucleoside ABC transporter, permease protein 2	Oceanicola granulosus HTCC2516 Gene: OG2516_08002: Predicted nucleoside ABC transporter, permease protein 2	Loktanella vestfoldensis SKA53 Gene: SKA53_14666: Predicted nucleoside ABC transporter, permease protein 2	Oceanicola batsensis HTCC2597 Gene: OB2597_10119: Predicted nucleoside ABC transporter, permease protein 2	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36 Gene: EE36_09480: Predicted nucleoside ABC transporter, permease protein 2	Silicibacter TM1040 Gene: TM1040_3097: Predicted nucleoside ABC transporter, permease protein 2	Silicibacter pomeroyi DSS-3 Gene: SPO0376: Predicted nucleoside ABC transporter, permease protein 2	Roseobacter sp. MED193 Gene: MED193_10398: Predicted nucleoside ABC transporter, permease protein 2	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Predicted nucleoside ABC transporter, permease protein 2

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RutR - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --