Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RutR in Silicibacter pomeroyi DSS-3

Properties
Regulator type: Transcription factor
TF locus tag: SPO1780
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Regulog: RutR - Rhodobacterales
Statistics of regulated genes:
- Genes 22
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 62 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -262
Score: 5.3
Sequence: TTTTGTCCGAAAGGTAAAAT
Locus tag: SPO3367
Name: deoC
Funciton: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
Locus tag: SPO3368
Name: ald
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3)
SPO3367
deoC
Deoxyribose-phosphate aldolase (EC 4.1.2.4)
SPO3368
ald
Aldehyde dehydrogenase (EC 1.2.1.3)
Position: -119
Score: 6
Sequence: ATTTGACCAACTGGTCAAAC
Locus tag: SPO1780
Name: rutR
Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
SPO1780
rutR
Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Position: 11
Score: 5
Sequence: AATTGACTGCTCGGTAAAAA
Locus tag: SPO2802
Name: pytM
Funciton: Predicted pyrimidine ABC transporter, substrate-binding protein
Locus tag: SPO2803
Name: pytN
Funciton: Predicted pyrimidine ABC transporter, ATP-binding protein
Locus tag: SPO2804
Name: pytO
Funciton: Predicted pyrimidine ABC transporter, permease protein 1
Locus tag: SPO2805
Name: pytQ
Funciton: Predicted pyrimidine ABC transporter, permease protein 2
Locus tag: SPO2806
Name: codA
Funciton: Cytosine deaminase (EC 3.5.4.1)
SPO2802
pytM
Predicted pyrimidine ABC transporter, substrate-binding protein
SPO2803
pytN
Predicted pyrimidine ABC transporter, ATP-binding protein
SPO2804
pytO
Predicted pyrimidine ABC transporter, permease protein 1
SPO2805
pytQ
Predicted pyrimidine ABC transporter, permease protein 2
SPO2806
codA
Cytosine deaminase (EC 3.5.4.1)
Position: -34
Score: 5.1
Sequence: TTCCGACCAGATGATCAAAA
Locus tag: SPO2930
Name: cdd
Funciton: Cytidine deaminase (EC 3.5.4.5)
Locus tag: SPO2929
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: SPO2928
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: SPO2927
Name: add
Funciton: Adenosine deaminase (EC 3.5.4.4)
Locus tag: SPO2926
Name: upp
Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9)
SPO2930
cdd
Cytidine deaminase (EC 3.5.4.5)
SPO2929
deoA
Thymidine phosphorylase (EC 2.4.2.4)
SPO2928
deoB
Phosphopentomutase (EC 5.4.2.7)
SPO2927
add
Adenosine deaminase (EC 3.5.4.4)
SPO2926
upp
Uracil phosphoribosyltransferase (EC 2.4.2.9)
Position: -142
Score: 5.1
Sequence: CTCGGACCATTCGGTCAAAA
Locus tag: SPO0379
Name: pntD
Funciton: Predicted nucleoside ABC transporter, substrate-binding protein
Locus tag: SPO0378
Name: pntA
Funciton: Predicted nucleoside ABC transporter, ATP-binding protein
Locus tag: SPO0377
Name: pntB
Funciton: Predicted nucleoside ABC transporter, permease protein 1
Locus tag: SPO0376
Name: pntC
Funciton: Predicted nucleoside ABC transporter, permease protein 2
SPO0379
pntD
Predicted nucleoside ABC transporter, substrate-binding protein
SPO0378
pntA
Predicted nucleoside ABC transporter, ATP-binding protein
SPO0377
pntB
Predicted nucleoside ABC transporter, permease protein 1
SPO0376
pntC
Predicted nucleoside ABC transporter, permease protein 2
Position: -89
Score: 5.1
Sequence: TTTTGACCGAAAGATAAATT
Position: -72
Score: 6.1
Sequence: ATTTTACCAGTTGATAAAAT
Locus tag: SPO1776
Name: pydX
Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Locus tag: SPO1777
Name: pydA
Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
SPO1776
pydX
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
SPO1777
pydA
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
Position: -64
Score: 6.1
Sequence: GTTTGACCAGTTGGTCAAAT
Locus tag: SPO1781
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: SPO1782
Name: RB2654_14945
Funciton: Hypothetical protein
Locus tag: SPO1783
Name: pydB
Funciton: phenylhydantoinase
SPO1781
pydC
Beta-ureidopropionase (EC 3.5.1.6)
SPO1782
RB2654_14945
Hypothetical protein
SPO1783
pydB
phenylhydantoinase
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