Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RutR in Silicibacter pomeroyi DSS-3

Properties
Regulator type: Transcription factor
TF locus tag: SPO1780
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Regulog: RutR - Rhodobacterales
Statistics of regulated genes:
- Genes 22
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 62 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -262
Score: 5.3
Sequence: TTTTGTCCGAAAGGTAAAAT
Locus tag: SPO3367
Name: deoC
Funciton: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
Locus tag: SPO3368
Name: ald
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3)
deoC
Deoxyribose-phosphate aldolase (EC 4.1.2.4)
ald
Aldehyde dehydrogenase (EC 1.2.1.3)

Position: -119
Score: 6
Sequence: ATTTGACCAACTGGTCAAAC
Locus tag: SPO1780
Name: rutR
Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
rutR
Transcriptional regulator RutR of pyrimidine catabolism, TetR family

Position: 11
Score: 5
Sequence: AATTGACTGCTCGGTAAAAA
Locus tag: SPO2802
Name: pytM
Funciton: Predicted pyrimidine ABC transporter, substrate-binding protein
Locus tag: SPO2803
Name: pytN
Funciton: Predicted pyrimidine ABC transporter, ATP-binding protein
Locus tag: SPO2804
Name: pytO
Funciton: Predicted pyrimidine ABC transporter, permease protein 1
Locus tag: SPO2805
Name: pytQ
Funciton: Predicted pyrimidine ABC transporter, permease protein 2
Locus tag: SPO2806
Name: codA
Funciton: Cytosine deaminase (EC 3.5.4.1)
pytM
Predicted pyrimidine ABC transporter, substrate-binding protein
pytN
Predicted pyrimidine ABC transporter, ATP-binding protein
pytO
Predicted pyrimidine ABC transporter, permease protein 1
pytQ
Predicted pyrimidine ABC transporter, permease protein 2
codA
Cytosine deaminase (EC 3.5.4.1)

Position: -34
Score: 5.1
Sequence: TTCCGACCAGATGATCAAAA
Locus tag: SPO2930
Name: cdd
Funciton: Cytidine deaminase (EC 3.5.4.5)
Locus tag: SPO2929
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: SPO2928
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: SPO2927
Name: add
Funciton: Adenosine deaminase (EC 3.5.4.4)
Locus tag: SPO2926
Name: upp
Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9)
cdd
Cytidine deaminase (EC 3.5.4.5)
deoA
Thymidine phosphorylase (EC 2.4.2.4)
deoB
Phosphopentomutase (EC 5.4.2.7)
add
Adenosine deaminase (EC 3.5.4.4)
upp
Uracil phosphoribosyltransferase (EC 2.4.2.9)

Position: -142
Score: 5.1
Sequence: CTCGGACCATTCGGTCAAAA
Locus tag: SPO0379
Name: pntD
Funciton: Predicted nucleoside ABC transporter, substrate-binding protein
Locus tag: SPO0378
Name: pntA
Funciton: Predicted nucleoside ABC transporter, ATP-binding protein
Locus tag: SPO0377
Name: pntB
Funciton: Predicted nucleoside ABC transporter, permease protein 1
Locus tag: SPO0376
Name: pntC
Funciton: Predicted nucleoside ABC transporter, permease protein 2
pntD
Predicted nucleoside ABC transporter, substrate-binding protein
pntA
Predicted nucleoside ABC transporter, ATP-binding protein
pntB
Predicted nucleoside ABC transporter, permease protein 1
pntC
Predicted nucleoside ABC transporter, permease protein 2

Position: -89
Score: 5.1
Sequence: TTTTGACCGAAAGATAAATT
Position: -72
Score: 6.1
Sequence: ATTTTACCAGTTGATAAAAT
Locus tag: SPO1776
Name: pydX
Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Locus tag: SPO1777
Name: pydA
Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
pydX
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
pydA
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)

Position: -64
Score: 6.1
Sequence: GTTTGACCAGTTGGTCAAAT
Locus tag: SPO1781
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: SPO1782
Name: RB2654_14945
Funciton: Hypothetical protein
Locus tag: SPO1783
Name: pydB
Funciton: phenylhydantoinase
pydC
Beta-ureidopropionase (EC 3.5.1.6)
RB2654_14945
Hypothetical protein
pydB
phenylhydantoinase
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