Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Profile of regulator RutR in Rhodobacterales

Properties
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Regulog: RutR - Rhodobacterales
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Rhodobacter sphaeroides 2.4.1
RSP_0189 pydX -74 5.4 TATTTATCGTTTGGTAAAAA
RSP_0186 rutR -80 4.8 GTTTGACCGTCCGGTCAGGA
RSP_0184 pydC -121 4.8 TATTGACCGCTTGGTCAGGT
RSP_0184 pydC -87 4.8 ATCTGACCGGATGGTCGAAC
RSP_0185 rutR -36 4.6 ACCTGACCAAGCGGTCAATA
RSP_0185 rutR -70 4.8 GTTCGACCATCCGGTCAGAT
Paracoccus denitrificans PD1222
Pden_1113 pydC -225 5.1 TATTGACTGGTTGATAAAAT
Jannaschia sp. CCS1
Jann_1306 codA -36 5.5 ATTTTACCATATGGTAAGGA
Jann_2709 praX -57 5.7 CCTTGACCGTTTGGTCAAAA
Jann_2713 pydX -76 5.8 ATTTTACCATTTGATAAATT
Jann_2710 rutR -177 5.4 TTTTGACCAAACGGTCAAGG
Jann_0789 deoC -65 5.6 TTTTGACCGTTTGGTCAACC
Rhodobacterales bacterium HTCC2654
RB2654_20823 cdd -29 5 ACTGGACCATACGGTCAAAG
RB2654_20923 pntD -186 4.8 TTTTGAACGTCGGGTCAAAT
RB2654_14990 pydX -337 6.1 TTTTTACCAATTGATAAAAA
RB2654_07801 rutR -61 4.9 CGTTGATCATCTGGTCAAAT
RB2654_10383 deoC -26 5.4 ATTTGACCAAAAGGAAAAAT
RB2654_14955 pydC -233 5.8 ATTTAACCGAATGGTAAAAA
Oceanicola granulosus HTCC2516
OG2516_10926 pydX -62 6 ATTTTACCGTTTGATAAAAT
OG2516_10906 rutR -92 5.5 ATTTGACCAATCGGTTAAAG
OG2516_07892 deoC -75 5.9 TTTTTACCGGTTGGTCAAAC
OG2516_10901 pydC -69 5.6 CTTTAACCGATTGGTCAAAT
Loktanella vestfoldensis SKA53
SKA53_10689 pydX -67 5.8 AATTTACCGTTTGATAAAAA
SKA53_10679 rutR -143 6 GTTTGACCAGATGGTCAAAA
SKA53_09929 deoC -59 6.2 GTTTGACCAATTGGTCAAAA
SKA53_10674 pydC -39 5.9 TTTTGACCATCTGGTCAAAC
Oceanicola batsensis HTCC2597
OB2597_04355 pydX -66 5.9 AATTTACCATTTGATAAAAA
OB2597_04330 rutR -177 5.9 TTTTGACCAATCGGTCAAAG
OB2597_04325 pydC -43 6 CTTTGACCGATTGGTCAAAA
Roseovarius nubinhibens ISM
ISM_13640 pydX -75 6.2 ATTTTACCAATTGATAAAAT
ISM_13625 rutR -147 6 ATTTTACCATTTGGTAAAGT
ISM_11210 pytM -53 5.8 TCTTTACCGTTTGGTAAAAT
ISM_13620 pydC -41 5.9 ACTTTACCAAATGGTAAAAT
Roseovarius sp. 217
ROS217_12316 rutR -58 5.8 TTTTTACCATTTGGTAAACT
ROS217_06720 pydX -69 6.2 ATTTTACCAATTGATAAAAT
ROS217_10977 pytM -44 6.2 ATTTTACCAATTGGTAAAAC
ROS217_12311 pydC -33 5.7 AGTTTACCAAATGGTAAAAA
Sulfitobacter sp. EE-36
EE36_09043 pydX -72 6.1 ATTTTACCAGTTGATAAAAA
EE36_09053 rutR -128 5.7 TTTTTACCATTTGGTAAATC
EE36_09058 pydC -61 5.8 GATTTACCAAATGGTAAAAA
Silicibacter TM1040
TM1040_1572 cdd -52 5.8 ATTTGACCATCCGATCAAAA
TM1040_3094 pntD -122 5.2 TTTAGACCGGCTGGTCAAAA
TM1040_1501 pydX -91 6.1 ATTTTACCAGTTGATAAAAA
TM1040_1499 rutR -156 6 ATTTGACCAACTGGTCAAAC
TM1040_0097 deoC -105 5.4 TTTTGTCCTTTTGGTAAAAA
TM1040_1498 pydC -153 6.1 GTTTGACCAGTTGGTCAAAT
Silicibacter pomeroyi DSS-3
SPO2930 cdd -34 5.1 TTCCGACCAGATGATCAAAA
SPO0379 pntD -142 5.1 CTCGGACCATTCGGTCAAAA
SPO1776 pydX -89 5.1 TTTTGACCGAAAGATAAATT
SPO1776 pydX -72 6.1 ATTTTACCAGTTGATAAAAT
SPO1780 rutR -119 6 ATTTGACCAACTGGTCAAAC
SPO3367 deoC -262 5.3 TTTTGTCCGAAAGGTAAAAT
SPO2802 pytM 11 5 AATTGACTGCTCGGTAAAAA
SPO1781 pydC -64 6.1 GTTTGACCAGTTGGTCAAAT
Roseobacter sp. MED193
MED193_06029 upp -97 5.4 CTTTGACCATCAGATCAAAA
MED193_10378 pntD -154 4.7 TTCGCACCAAACGGTCAAAA
MED193_05534 pydX -74 6.1 ATTTTACCAGTTGATAAAAA
MED193_05524 rutR -155 6 ATTTGACCAACTGGTCAAAC
MED193_12973 deoC -105 5.5 ATTTGTCCAAAAGGTCAAAT
MED193_17244 pytM 74 5 TTTTTACCCTTTGGACAAGA
MED193_05484 pytD -60 5.1 ATTTGATCGAAGGGTCAAAT
MED193_05519 pydC -119 6.1 GTTTGACCAGTTGGTCAAAT
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