Profile of regulator RutR in Rhodobacterales
Properties
| Regulator family: |
TetR |
| Regulation mode: |
repressor |
| Biological process: |
Pyrimidine utilization |
| Effector: |
Uracil |
| Regulog: |
RutR - Rhodobacterales |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Rhodobacter sphaeroides 2.4.1
|
|
RSP_0189 |
pydX |
-74 |
5.4 |
TATTTATCGTTTGGTAAAAA |
|
RSP_0186 |
rutR |
-80 |
4.8 |
GTTTGACCGTCCGGTCAGGA |
|
RSP_0184 |
pydC |
-121 |
4.8 |
TATTGACCGCTTGGTCAGGT |
|
RSP_0184 |
pydC |
-87 |
4.8 |
ATCTGACCGGATGGTCGAAC |
|
RSP_0185 |
rutR |
-36 |
4.6 |
ACCTGACCAAGCGGTCAATA |
|
RSP_0185 |
rutR |
-70 |
4.8 |
GTTCGACCATCCGGTCAGAT |
|
Paracoccus denitrificans PD1222
|
|
Pden_1113 |
pydC |
-225 |
5.1 |
TATTGACTGGTTGATAAAAT |
|
Jannaschia sp. CCS1
|
|
Jann_1306 |
codA |
-36 |
5.5 |
ATTTTACCATATGGTAAGGA |
|
Jann_2709 |
praX |
-57 |
5.7 |
CCTTGACCGTTTGGTCAAAA |
|
Jann_2713 |
pydX |
-76 |
5.8 |
ATTTTACCATTTGATAAATT |
|
Jann_2710 |
rutR |
-177 |
5.4 |
TTTTGACCAAACGGTCAAGG |
|
Jann_0789 |
deoC |
-65 |
5.6 |
TTTTGACCGTTTGGTCAACC |
|
Rhodobacterales bacterium HTCC2654
|
|
RB2654_20823 |
cdd |
-29 |
5 |
ACTGGACCATACGGTCAAAG |
|
RB2654_20923 |
pntD |
-186 |
4.8 |
TTTTGAACGTCGGGTCAAAT |
|
RB2654_14990 |
pydX |
-337 |
6.1 |
TTTTTACCAATTGATAAAAA |
|
RB2654_07801 |
rutR |
-61 |
4.9 |
CGTTGATCATCTGGTCAAAT |
|
RB2654_10383 |
deoC |
-26 |
5.4 |
ATTTGACCAAAAGGAAAAAT |
|
RB2654_14955 |
pydC |
-233 |
5.8 |
ATTTAACCGAATGGTAAAAA |
|
Oceanicola granulosus HTCC2516
|
|
OG2516_10926 |
pydX |
-62 |
6 |
ATTTTACCGTTTGATAAAAT |
|
OG2516_10906 |
rutR |
-92 |
5.5 |
ATTTGACCAATCGGTTAAAG |
|
OG2516_07892 |
deoC |
-75 |
5.9 |
TTTTTACCGGTTGGTCAAAC |
|
OG2516_10901 |
pydC |
-69 |
5.6 |
CTTTAACCGATTGGTCAAAT |
|
Loktanella vestfoldensis SKA53
|
|
SKA53_10689 |
pydX |
-67 |
5.8 |
AATTTACCGTTTGATAAAAA |
|
SKA53_10679 |
rutR |
-143 |
6 |
GTTTGACCAGATGGTCAAAA |
|
SKA53_09929 |
deoC |
-59 |
6.2 |
GTTTGACCAATTGGTCAAAA |
|
SKA53_10674 |
pydC |
-39 |
5.9 |
TTTTGACCATCTGGTCAAAC |
|
Oceanicola batsensis HTCC2597
|
|
OB2597_04355 |
pydX |
-66 |
5.9 |
AATTTACCATTTGATAAAAA |
|
OB2597_04330 |
rutR |
-177 |
5.9 |
TTTTGACCAATCGGTCAAAG |
|
OB2597_04325 |
pydC |
-43 |
6 |
CTTTGACCGATTGGTCAAAA |
|
Roseovarius nubinhibens ISM
|
|
ISM_13640 |
pydX |
-75 |
6.2 |
ATTTTACCAATTGATAAAAT |
|
ISM_13625 |
rutR |
-147 |
6 |
ATTTTACCATTTGGTAAAGT |
|
ISM_11210 |
pytM |
-53 |
5.8 |
TCTTTACCGTTTGGTAAAAT |
|
ISM_13620 |
pydC |
-41 |
5.9 |
ACTTTACCAAATGGTAAAAT |
|
Roseovarius sp. 217
|
|
ROS217_12316 |
rutR |
-58 |
5.8 |
TTTTTACCATTTGGTAAACT |
|
ROS217_06720 |
pydX |
-69 |
6.2 |
ATTTTACCAATTGATAAAAT |
|
ROS217_10977 |
pytM |
-44 |
6.2 |
ATTTTACCAATTGGTAAAAC |
|
ROS217_12311 |
pydC |
-33 |
5.7 |
AGTTTACCAAATGGTAAAAA |
|
Sulfitobacter sp. EE-36
|
|
EE36_09043 |
pydX |
-72 |
6.1 |
ATTTTACCAGTTGATAAAAA |
|
EE36_09053 |
rutR |
-128 |
5.7 |
TTTTTACCATTTGGTAAATC |
|
EE36_09058 |
pydC |
-61 |
5.8 |
GATTTACCAAATGGTAAAAA |
|
Silicibacter TM1040
|
|
TM1040_1572 |
cdd |
-52 |
5.8 |
ATTTGACCATCCGATCAAAA |
|
TM1040_3094 |
pntD |
-122 |
5.2 |
TTTAGACCGGCTGGTCAAAA |
|
TM1040_1501 |
pydX |
-91 |
6.1 |
ATTTTACCAGTTGATAAAAA |
|
TM1040_1499 |
rutR |
-156 |
6 |
ATTTGACCAACTGGTCAAAC |
|
TM1040_0097 |
deoC |
-105 |
5.4 |
TTTTGTCCTTTTGGTAAAAA |
|
TM1040_1498 |
pydC |
-153 |
6.1 |
GTTTGACCAGTTGGTCAAAT |
|
Silicibacter pomeroyi DSS-3
|
|
SPO2930 |
cdd |
-34 |
5.1 |
TTCCGACCAGATGATCAAAA |
|
SPO0379 |
pntD |
-142 |
5.1 |
CTCGGACCATTCGGTCAAAA |
|
SPO1776 |
pydX |
-89 |
5.1 |
TTTTGACCGAAAGATAAATT |
|
SPO1776 |
pydX |
-72 |
6.1 |
ATTTTACCAGTTGATAAAAT |
|
SPO1780 |
rutR |
-119 |
6 |
ATTTGACCAACTGGTCAAAC |
|
SPO3367 |
deoC |
-262 |
5.3 |
TTTTGTCCGAAAGGTAAAAT |
|
SPO2802 |
pytM |
11 |
5 |
AATTGACTGCTCGGTAAAAA |
|
SPO1781 |
pydC |
-64 |
6.1 |
GTTTGACCAGTTGGTCAAAT |
|
Roseobacter sp. MED193
|
|
MED193_06029 |
upp |
-97 |
5.4 |
CTTTGACCATCAGATCAAAA |
|
MED193_10378 |
pntD |
-154 |
4.7 |
TTCGCACCAAACGGTCAAAA |
|
MED193_05534 |
pydX |
-74 |
6.1 |
ATTTTACCAGTTGATAAAAA |
|
MED193_05524 |
rutR |
-155 |
6 |
ATTTGACCAACTGGTCAAAC |
|
MED193_12973 |
deoC |
-105 |
5.5 |
ATTTGTCCAAAAGGTCAAAT |
|
MED193_17244 |
pytM |
74 |
5 |
TTTTTACCCTTTGGACAAGA |
|
MED193_05484 |
pytD |
-60 |
5.1 |
ATTTGATCGAAGGGTCAAAT |
|
MED193_05519 |
pydC |
-119 |
6.1 |
GTTTGACCAGTTGGTCAAAT |
Export
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Regulatory Sites
|
[ FASTA format ]
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