Regulon of RutR in Oceanicola granulosus HTCC2516

Properties
Regulator type:	Transcription factor
TF locus tag:	OG2516_10906
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Pyrimidine utilization
Effector:	Uracil
Regulog:	RutR - Rhodobacterales
Statistics of regulated genes:
- Genes	14
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 62 sites [see more]

Member of regulog collections

By trascription factor - RutR
By taxonomy - Rhodobacterales
By TF family - TetR
By effector - Uracil
By pathway - Pyrimidine utilization

Regulated operons
	Locus Tag	Name	Function
Position: -75 Score: 5.9 Sequence: TTTTTACCGGTTGGTCAAAC Locus tag: OG2516_07892 Name: deoC Funciton: Deoxyribose-phosphate aldolase (EC 4.1.2.4) Locus tag: OG2516_07897 Name: ald Funciton: Aldehyde dehydrogenase (EC 1.2.1.3)
	OG2516_07892	deoC	Deoxyribose-phosphate aldolase (EC 4.1.2.4)
	OG2516_07897	ald	Aldehyde dehydrogenase (EC 1.2.1.3)
Position: -92 Score: 5.5 Sequence: ATTTGACCAATCGGTTAAAG Locus tag: OG2516_10906 Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
	OG2516_10906	rutR	Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Position: -62 Score: 6 Sequence: ATTTTACCGTTTGATAAAAT Locus tag: OG2516_10926 Name: pydX Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism Locus tag: OG2516_10921 Name: pydA Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
	OG2516_10926	pydX	Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
	OG2516_10921	pydA	Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
Position: -69 Score: 5.6 Sequence: CTTTAACCGATTGGTCAAAT Locus tag: OG2516_10901 Name: pydC Funciton: Beta-ureidopropionase (EC 3.5.1.6) Locus tag: OG2516_10896 Name: OG2516_10896 Funciton: Hypothetical protein Locus tag: OG2516_10891 Name: null Funciton: N-carbamoyl-L-amino acid amidohydrolase Locus tag: OG2516_10886 Name: pydB Funciton: phenylhydantoinase Locus tag: OG2516_10881 Name: RSP_1242 Funciton: Predicted lyase Locus tag: OG2516_10876 Name: pytA Funciton: Pyrimidine ABC transporter, ATP-binding protein Locus tag: OG2516_10871 Name: pytB Funciton: Pyrimidine ABC transporter, permease protein 1 Locus tag: OG2516_10866 Name: pytC Funciton: Pyrimidine ABC transporter, permease protein 2 Locus tag: OG2516_10861 Name: pytD Funciton: Pyrimidine ABC transporter, substrate-binding protein
	OG2516_10901	pydC	Beta-ureidopropionase (EC 3.5.1.6)
	OG2516_10896	OG2516_10896	Hypothetical protein
	OG2516_10891		N-carbamoyl-L-amino acid amidohydrolase
	OG2516_10886	pydB	phenylhydantoinase
	OG2516_10881	RSP_1242	Predicted lyase
	OG2516_10876	pytA	Pyrimidine ABC transporter, ATP-binding protein
	OG2516_10871	pytB	Pyrimidine ABC transporter, permease protein 1
	OG2516_10866	pytC	Pyrimidine ABC transporter, permease protein 2
	OG2516_10861	pytD	Pyrimidine ABC transporter, substrate-binding protein

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD