Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RutR in Oceanicola granulosus HTCC2516

Properties
Regulator type: Transcription factor
TF locus tag: OG2516_10906
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Regulog: RutR - Rhodobacterales
Statistics of regulated genes:
- Genes 14
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 62 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -75
Score: 5.9
Sequence: TTTTTACCGGTTGGTCAAAC
Locus tag: OG2516_07892
Name: deoC
Funciton: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
Locus tag: OG2516_07897
Name: ald
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3)
deoC
Deoxyribose-phosphate aldolase (EC 4.1.2.4)
ald
Aldehyde dehydrogenase (EC 1.2.1.3)

Position: -92
Score: 5.5
Sequence: ATTTGACCAATCGGTTAAAG
Locus tag: OG2516_10906
Name: rutR
Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
rutR
Transcriptional regulator RutR of pyrimidine catabolism, TetR family

Position: -62
Score: 6
Sequence: ATTTTACCGTTTGATAAAAT
Locus tag: OG2516_10926
Name: pydX
Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Locus tag: OG2516_10921
Name: pydA
Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
pydX
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
pydA
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)

Position: -69
Score: 5.6
Sequence: CTTTAACCGATTGGTCAAAT
Locus tag: OG2516_10901
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: OG2516_10896
Name: OG2516_10896
Funciton: Hypothetical protein
Locus tag: OG2516_10891
Name: null
Funciton: N-carbamoyl-L-amino acid amidohydrolase
Locus tag: OG2516_10886
Name: pydB
Funciton: phenylhydantoinase
Locus tag: OG2516_10881
Name: RSP_1242
Funciton: Predicted lyase
Locus tag: OG2516_10876
Name: pytA
Funciton: Pyrimidine ABC transporter, ATP-binding protein
Locus tag: OG2516_10871
Name: pytB
Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: OG2516_10866
Name: pytC
Funciton: Pyrimidine ABC transporter, permease protein 2
Locus tag: OG2516_10861
Name: pytD
Funciton: Pyrimidine ABC transporter, substrate-binding protein
pydC
Beta-ureidopropionase (EC 3.5.1.6)
OG2516_10896
Hypothetical protein
N-carbamoyl-L-amino acid amidohydrolase
pydB
phenylhydantoinase
RSP_1242
Predicted lyase
pytA
Pyrimidine ABC transporter, ATP-binding protein
pytB
Pyrimidine ABC transporter, permease protein 1
pytC
Pyrimidine ABC transporter, permease protein 2
pytD
Pyrimidine ABC transporter, substrate-binding protein
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