Regulon of RutR in Jannaschia sp. CCS1
| Regulator type: | Transcription factor |
| TF locus tag: | Jann_2710 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Pyrimidine utilization |
| Effector: | Uracil |
| Regulog: | RutR - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 24 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - RutR
- By taxonomy - Rhodobacterales
- By TF family - TetR
- By effector - Uracil
- By pathway - Pyrimidine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -65
Score: 5.6 Sequence: TTTTGACCGTTTGGTCAACC
Locus tag: Jann_0789
Name: deoC Funciton: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
Locus tag: Jann_0788
Name: Jann_0788 Funciton: Hypothetical protein
Locus tag: Jann_0787
Name: Jann_0787 Funciton: Hypothetical protein
Locus tag: Jann_0786
Name: ald Funciton: Aldehyde dehydrogenase (EC 1.2.1.3) |
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deoC
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Deoxyribose-phosphate aldolase (EC 4.1.2.4)
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Jann_0788
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Hypothetical protein
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Jann_0787
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Hypothetical protein
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ald
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Aldehyde dehydrogenase (EC 1.2.1.3)
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Position: -177
Score: 5.4 Sequence: TTTTGACCAAACGGTCAAGG
Locus tag: Jann_2710
Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
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rutR
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Transcriptional regulator RutR of pyrimidine catabolism, TetR family
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Position: -36
Score: 5.5 Sequence: ATTTTACCATATGGTAAGGA
Locus tag: Jann_1306
Name: codA Funciton: Cytosine deaminase (EC 3.5.4.1)
Locus tag: Jann_1305
Name: pytM Funciton: Predicted pyrimidine ABC transporter, substrate-binding protein
Locus tag: Jann_1304
Name: amiC Funciton: Predicted amidase
Locus tag: Jann_1303
Name: pytN Funciton: Predicted pyrimidine ABC transporter, ATP-binding protein
Locus tag: Jann_1302
Name: pytO Funciton: Predicted pyrimidine ABC transporter, permease protein 1
Locus tag: Jann_1301
Name: pytQ Funciton: Predicted pyrimidine ABC transporter, permease protein 2 |
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codA
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Cytosine deaminase (EC 3.5.4.1)
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pytM
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Predicted pyrimidine ABC transporter, substrate-binding protein
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amiC
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Predicted amidase
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pytN
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Predicted pyrimidine ABC transporter, ATP-binding protein
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pytO
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Predicted pyrimidine ABC transporter, permease protein 1
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pytQ
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Predicted pyrimidine ABC transporter, permease protein 2
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Position: -76
Score: 5.8 Sequence: ATTTTACCATTTGATAAATT
Locus tag: Jann_2713
Name: pydX Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Locus tag: Jann_2712
Name: pydA Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) |
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pydX
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Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
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pydA
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Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
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Position: -57
Score: 5.7 Sequence: CCTTGACCGTTTGGTCAAAA
Locus tag: Jann_2709
Name: praX Funciton: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
Locus tag: Jann_2708
Name: Jann_2708 Funciton: Hypothetical protein
Locus tag: Jann_2707
Name: pydC Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: Jann_2706
Name: Jann_2706 Funciton: hypothetical protein
Locus tag: Jann_2705
Name: pydB Funciton: phenylhydantoinase
Locus tag: Jann_2704
Name: Jann_2704 Funciton: Hypothetical protein
Locus tag: Jann_2703
Name: pytA Funciton: Pyrimidine ABC transporter, ATP-binding protein
Locus tag: Jann_2702
Name: Jann_2702 Funciton: Predicted N-acetyltransferase
Locus tag: Jann_2701
Name: pytB Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: Jann_2700
Name: pytC Funciton: Pyrimidine ABC transporter, permease protein 2
Locus tag: Jann_2699
Name: pytD Funciton: Pyrimidine ABC transporter, substrate-binding protein |
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praX
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Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
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Jann_2708
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Hypothetical protein
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pydC
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Beta-ureidopropionase (EC 3.5.1.6)
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Jann_2706
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hypothetical protein
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pydB
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phenylhydantoinase
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Jann_2704
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Hypothetical protein
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pytA
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Pyrimidine ABC transporter, ATP-binding protein
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Jann_2702
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Predicted N-acetyltransferase
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pytB
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Pyrimidine ABC transporter, permease protein 1
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pytC
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Pyrimidine ABC transporter, permease protein 2
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pytD
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Pyrimidine ABC transporter, substrate-binding protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |