Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RutR in Jannaschia sp. CCS1

Properties
Regulator type: Transcription factor
TF locus tag: Jann_2710
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Regulog: RutR - Rhodobacterales
Statistics of regulated genes:
- Genes 24
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 62 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -65
Score: 5.6
Sequence: TTTTGACCGTTTGGTCAACC
Locus tag: Jann_0789
Name: deoC
Funciton: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
Locus tag: Jann_0788
Name: Jann_0788
Funciton: Hypothetical protein
Locus tag: Jann_0787
Name: Jann_0787
Funciton: Hypothetical protein
Locus tag: Jann_0786
Name: ald
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3)
deoC
Deoxyribose-phosphate aldolase (EC 4.1.2.4)
Jann_0788
Hypothetical protein
Jann_0787
Hypothetical protein
ald
Aldehyde dehydrogenase (EC 1.2.1.3)

Position: -177
Score: 5.4
Sequence: TTTTGACCAAACGGTCAAGG
Locus tag: Jann_2710
Name: rutR
Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
rutR
Transcriptional regulator RutR of pyrimidine catabolism, TetR family

Position: -36
Score: 5.5
Sequence: ATTTTACCATATGGTAAGGA
Locus tag: Jann_1306
Name: codA
Funciton: Cytosine deaminase (EC 3.5.4.1)
Locus tag: Jann_1305
Name: pytM
Funciton: Predicted pyrimidine ABC transporter, substrate-binding protein
Locus tag: Jann_1304
Name: amiC
Funciton: Predicted amidase
Locus tag: Jann_1303
Name: pytN
Funciton: Predicted pyrimidine ABC transporter, ATP-binding protein
Locus tag: Jann_1302
Name: pytO
Funciton: Predicted pyrimidine ABC transporter, permease protein 1
Locus tag: Jann_1301
Name: pytQ
Funciton: Predicted pyrimidine ABC transporter, permease protein 2
codA
Cytosine deaminase (EC 3.5.4.1)
pytM
Predicted pyrimidine ABC transporter, substrate-binding protein
amiC
Predicted amidase
pytN
Predicted pyrimidine ABC transporter, ATP-binding protein
pytO
Predicted pyrimidine ABC transporter, permease protein 1
pytQ
Predicted pyrimidine ABC transporter, permease protein 2

Position: -76
Score: 5.8
Sequence: ATTTTACCATTTGATAAATT
Locus tag: Jann_2713
Name: pydX
Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Locus tag: Jann_2712
Name: pydA
Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
pydX
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
pydA
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)

Position: -57
Score: 5.7
Sequence: CCTTGACCGTTTGGTCAAAA
Locus tag: Jann_2709
Name: praX
Funciton: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
Locus tag: Jann_2708
Name: Jann_2708
Funciton: Hypothetical protein
Locus tag: Jann_2707
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: Jann_2706
Name: Jann_2706
Funciton: hypothetical protein
Locus tag: Jann_2705
Name: pydB
Funciton: phenylhydantoinase
Locus tag: Jann_2704
Name: Jann_2704
Funciton: Hypothetical protein
Locus tag: Jann_2703
Name: pytA
Funciton: Pyrimidine ABC transporter, ATP-binding protein
Locus tag: Jann_2702
Name: Jann_2702
Funciton: Predicted N-acetyltransferase
Locus tag: Jann_2701
Name: pytB
Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: Jann_2700
Name: pytC
Funciton: Pyrimidine ABC transporter, permease protein 2
Locus tag: Jann_2699
Name: pytD
Funciton: Pyrimidine ABC transporter, substrate-binding protein
praX
Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
Jann_2708
Hypothetical protein
pydC
Beta-ureidopropionase (EC 3.5.1.6)
Jann_2706
hypothetical protein
pydB
phenylhydantoinase
Jann_2704
Hypothetical protein
pytA
Pyrimidine ABC transporter, ATP-binding protein
Jann_2702
Predicted N-acetyltransferase
pytB
Pyrimidine ABC transporter, permease protein 1
pytC
Pyrimidine ABC transporter, permease protein 2
pytD
Pyrimidine ABC transporter, substrate-binding protein
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